User: hlsz.laszlo

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Posts by hlsz.laszlo

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Comment: C: DiffBind report and MA-plot DB difference
... Thank you!  ...
written 4 months ago by hlsz.laszlo0
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Comment: C: DiffBind report and MA-plot DB difference
... Thank you for the response. I am using R version 3.4.3 (2017-11-30) and DiffBind_2.6.5. I also using tidyverse_1.2.1, which generates some namespace conflicts, but even if I don't load tidyverse I get the same values (norm/notnorm). I send you the ATAC.dba.count DBA object and R code to your emai ...
written 4 months ago by hlsz.laszlo0
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DiffBind report and MA-plot DB difference
... Hi all, I using DiffBind to compare WT vs Treatment ATAC-seq samples and I have two questions/problems regarding the DiffBind dba.report() and dba.plotMA() functions. 1.: dba.plotMA() indicates more differential sites than dba.report() with the same thresholds.  The input csv: SampleID,Tissue,F ...
diffbind R differential binding analysis report written 4 months ago by hlsz.laszlo0 • updated 4 months ago by Rory Stark2.4k

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