User: Kort, Eric

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Kort, Eric220
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Posts by Kort, Eric

<prev • 26 results • page 1 of 3 • next >
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Gviz: control height of items within BiomartGeneRegionTrack (StackedTrack)
... I would like to keep the track heights in my Gviz plot the same between differing datasets, which I can do nicely with the sizes argument of plotTracks. However, I would also like to control the height of items within a StackedTrack (actually, a BiomartGeneRegionTrack) so that the track can be fixe ...
gviz gviz-package written 2.5 years ago by Kort, Eric220
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Comment: C: rhdf5 segfault on write of large matrix
... No actually I can comment.  The button just looked a bit deactivated on my mobile device but in fact works fine. ...
written 4.4 years ago by Kort, Eric220
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Answer: A: rhdf5 segfault on write of large matrix
... (I can't 'comment'...presumably because I don't have enough reputation points yet?) Thanks Bernd. Your work around will be perfect for the time being. For what it's worth, I have experienced similar failures with two older hdf5 libraries in the CRAN archives which I built from source, which leads ...
written 4.4 years ago by Kort, Eric220
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rhdf5 segfault on write of large matrix
... I am getting a segfault when trying to write a matrix of more than about 20 million character values each about 30 characters long.  The following demo reproduces the errors on my machine (edited to remove extraneous lines I inadvertently pasted as pointed out by Wolfgang Huber below). library(rhd ...
rhdf5 segfault written 4.4 years ago by Kort, Eric220
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Answer: A: GO over representation analysis
... For the last couple of days I have been unable to download GEOmetadb.sqlite.gz for use with GEOmetadb. getSQLiteFile() fails, as does an attempt to link to http://meltzerlab.nci.nih.gov/apps/geo/GEOmetadb.sqlite.gz directly. Indeed, http://meltzerlab.nci.nih.gov is also inaccessible for me. My pro ...
written 11.0 years ago by Kort, Eric220
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Comment: C: drinks anyone?
... So....just to clarify, I am NOT invited for a drink? Talk about an emotional roller coaster. -Eric > -----Original Message----- > From: bioconductor-bounces at stat.math.ethz.ch > [mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of > Gordon K Smyth > Sent: Friday, Augus ...
written 11.1 years ago by Kort, Eric220
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Comment: C: Rgraphviz, R 2.7.0 and Windows XP
... I'm even more reluctant to chime in, but... There are enough variables here that it seems a case could be made for making the graphviz dlls/shared libraries compatible with the BioC binary packages of Rgraphviz available on an applicable website to be copied into the lib directory of Rgraphviz. Si ...
written 11.3 years ago by Kort, Eric220
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Answer: A: flowClust package - how to get it installed
... Anne writes: > > Hi, > > I'm trying to install the new flowClust package on a Windows > XP, IBM PC. According to the manual I also need to install > GSL, BLAS and a C compiler. These instructions apply if you want to build the package from source (as you would on, for example, a L ...
written 11.3 years ago by Kort, Eric220
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Answer: A: cannot allocate vector of size 762 Mo ! One more time !
... See below. Germain Paimparay writes: > Sent: Wednesday, May 21, 2008 12:41 PM > To: bioconductor at stat.math.ethz.ch > Subject: [BioC] cannot allocate vector of size 762 Mo ! One > more time ! > > > Hello, > > My name is Germain and I'm Bioinformatician. > > I hav ...
written 11.3 years ago by Kort, Eric220
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Answer: A: Restriction enzyme digestion
... Anh Tran writes: > Hi all, > > I'm new to this mailing list and have a very simple question > about digestion with restriction enzyme for the whole genome. > > I'm using package BSgenome.Hsapiens.UCSC.hg18 to find the cut > site of enzyme. Is there a faster way (ie. pre-built p ...
written 11.4 years ago by Kort, Eric220

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