User: Yahan

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Yahan0
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Posts by Yahan

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Comment: C: Normalized counts after fitting linear model with batch effects - edgeR
... True. I noticed this huge batch effects problem after I got the data. I'm also concerned about the design. ...
written 16 months ago by Yahan0
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Comment: C: Normalized counts after fitting linear model with batch effects - edgeR
... Thank you Ryan! I've seen the huge change on library size and cpm numbers made by removeBatchEffect. I made a mistake and you are right on the logCPM. ...
written 16 months ago by Yahan0
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Normalized counts after fitting linear model with batch effects - edgeR
... Hi, I'm dealing with a set of sequencing data with batch effects. The samples were sequenced at two different times (4 control + 4 treatment1 at the first time, and 1 control + 4 treatment2 at the second time). The batch effects are very obvious when I looked at the PCA plots of raw data. I used RU ...
edger batch effect normalized counts written 16 months ago by Yahan0 • updated 16 months ago by Ryan C. Thompson7.3k

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