User: maherr

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maherr0
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Posts by maherr

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Comment: C: DESeq2 Model matrix not full rank error despite fully-crossed experimental desig
... Thank you Michael! I had one more questions. When I run DESeq with the formula ~ temp*nutrient*corallivory I get the following results: > resultsNames(dds_test_int) [1] "Intercept" "temp_high_vs_Control" [3] "nutrient_NH4._vs_Control" ...
written 19 months ago by maherr0
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DESeq2 Model matrix not full rank error despite fully-crossed experimental design
... I have a phyloseq class with an otu_table, sample_data, tax_table, and phy_tree. I want to use the formula: dds_int <- phyloseq_to_deseq2(qd, ~ temp:nutrient:corallivory) When I run this, I get the error: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the mod ...
deseq2 multiple factor design written 20 months ago by maherr0 • updated 20 months ago by Michael Love25k

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