User: jfreixas

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jfreixas0
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Posts by jfreixas

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Using kegga and goana for Plants
... I am trying to run a gene ontology analysis but my reference species is A.thaliana available here: org.At.tair.db. However, the function goana doesn't recognize species "At" and performs the GO enrichment against the human genome. Kegga seems to recognize species "At" but I get the following error: ...
edger goana kegga written 11 months ago by jfreixas0 • updated 11 months ago by Gordon Smyth36k
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[goana] function within edgeR not working for Arabidopsis
... Hi All, I am trying to run a gene ontology analysis using Arabidopsis annotation as reference (available at ""org.At.tair.db""). I am using the edgeR package particularly the function goana however when I specify the species (species=At) the function doesn't recognize the library org.At.tair.db. Th ...
gene ontology written 11 months ago by jfreixas0 • updated 11 months ago by Gordon Smyth36k

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