User: bsad

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bsad0
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Posts by bsad

<prev • 3 results • page 1 of 1 • next >
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PCA analysis with 2 biological replicates
... Hi, I'm really new to PCA analysis and just trying to understand how it works and the underlying stats. My problem is that when I run it for all my 3 biological replicates (3 Controls and 3 treatment) all 3 controls seem to correlate well but one of the "treatment" samples is really far off the ot ...
bayseq pca written 6 months ago by bsad0
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Comment: A: Problem in reading .bam files (aligned to transcriptome) with ribofileCR functio
... Hi, thank you very much for your reply, I typed these commands based on the RiboSeqR manual. The error message I'm getting is: Error in file(file, "r") : cannot open the connection In addition: Warning message: In file(file, "r") :   cannot open file '/Users/bsad/Documents/PhD/polysome_data/NGS_att ...
written 20 months ago by bsad0
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Problem in reading .bam files (aligned to transcriptome) with ribofileCR function
... Hi, I'm a beginner in using R (so I apologise in advance if my question is really naive :) ) and I'm trying to use RiboSeqR to read my .bam files that come from the alignment of riboseq reads to the transcriptome (using bowtie). I've written this so far but it seems unable to access my files..Maybe ...
R riboseqr ribosome profiling written 20 months ago by bsad0

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