User: jfgout

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jfgout10
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Posts by jfgout

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Comment: C: No BAM option in readAligned from the ShortRead package
... Thank you for this information. Any recommendation on which package I should use to (easily) call nucleosome scores from aligned reads (bam files)?   jf ...
written 20 months ago by jfgout10
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Comment: C: No BAM option in readAligned from the ShortRead package
... Thanks a lot for your answer. The problem is that I need to get an object of class "AlignedRead" (or "RangedData" with a strand attribute) to feed to the functions from the nucleR package. I'll try to find a way to convert the 'GAlignments' object returned by readGAlignments into AlignedRead or Ran ...
written 20 months ago by jfgout10
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No BAM option in readAligned from the ShortRead package
... Hi everyone,   I'm trying to load a BAM file into R for further analysis with NucleR. Following the recommendations from the NucleR package documentation, I tried using the 'readAligned' function from package 'ShortRead' to read my BAM file. Only problem is, this function does not seem to be capab ...
shortread nucler bioconductor bam file written 20 months ago by jfgout10 • updated 20 months ago by Dario Strbenac1.5k

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