User: bn3301

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bn33010
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Posts by bn3301

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DESeq2: Handling batch effects with only one control replicate coming from another batch
... I am using DESeq2 to analyse RNA seq data. I have 5 conditions each with two replicates and I am comparing these against controls again with 2 replicates. However the issue is that one of control replicates was sequenced earlier. Thus only this control replicate belongs to a different batch from al ...
deseq2 rna-seq written 10 weeks ago by bn33010 • updated 10 weeks ago by Michael Love19k
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DESeq2-No replicates-Utility of log2fold shrunk values?
... I am using DESeq2 to estimate fold changes between two conditions neither of which have any replicates. Will it be of any utility to use log2fold shrunken changes over the non-shrunken ones in this case? ...
rnaseq deseq2 written 8 months ago by bn33010 • updated 8 months ago by Michael Love19k

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