User: Lolla

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Lolla0
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Posts by Lolla

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counting reads with muliple hits with SummarizeOverlaps
... Hi in this web page http://bioconductor.org/packages/3.7/bioc/vignettes/GenomicAlignments/inst/doc/summarizeOverlaps.pdf I worked out the example listed in top of page six, I noticed read 3 and 6 overlap two features (C and G), Feature G  "overlaps" with C when counting using summarizeoverlaps Uni ...
R ngs summarizeoverlaps seq written 8 months ago by Lolla0 • updated 7 months ago by Valerie Obenchain ♦♦ 6.7k
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Comment: C: Minimum overlap for reads to be counted in summarizeoverlaps
... Thank you Valerie... ...
written 9 months ago by Lolla0
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Minimum overlap for reads to be counted in summarizeoverlaps
... Hello My question is similar to this one https://support.bioconductor.org/p/79125/ suppose I have read of length (100bp) and I use summarizeOverlap() mode= Union what is the minimum overlap between read and target feature to count hit i.e how may basepairs should hit the feature to count as hit... ...
R summarizeoverlaps written 9 months ago by Lolla0 • updated 9 months ago by Valerie Obenchain ♦♦ 6.7k

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