User: Yuqia

gravatar for Yuqia
Yuqia0
Reputation:
0
Status:
New User
Location:
Switzerland
Last seen:
4 months, 2 weeks ago
Joined:
5 months ago
Email:
q*******@gmail.com

Posts by Yuqia

<prev • 5 results • page 1 of 1 • next >
0
votes
3
answers
127
views
3
answers
Answer: A: incorrect biomaRt output order of gene list
... Hi James, Thank you very much! That sounds great! I'll try that. Hi cherlyn, the V1 is the automatic header of the list when I use as.vector(list). But when I use read.csv to import the data, the list does not have that V1. Thank you for your input. I'll try that as well. ...
written 4 months ago by Yuqia0
0
votes
3
answers
127
views
3
answers
incorrect biomaRt output order of gene list
... Hello, I have another problem with biomaRt. My ranked list of differentially expressed genes (ENSG...) are not ordered by the id number but by the expression fold change (naturally): > library(biomaRt) > mart <- useMart(biomart = "ensembl", dataset = "hsapiens_gene_ensembl") > list &l ...
biomart error ensembldb written 4 months ago by Yuqia0
0
votes
3
answers
199
views
3
answers
Answer: A: converting ensembl transcript ID to ensemble gene: problem & missing values
... Hello again, I have another problem with biomaRt. My ranked list of differentially expressed genes (ENSG...) are not ordered by the number but by the expression fold change (naturally): > library(biomaRt) > mart <- useMart(biomart = "ensembl", dataset = "hsapiens_gene_ensembl") > list ...
written 4 months ago by Yuqia0
0
votes
3
answers
199
views
3
answers
Answer: A: converting ensembl transcript ID to ensemble gene: problem & missing values
... Awesome! Your code works perfectly. Thanks a lot Mike! ...
written 5 months ago by Yuqia0
1
vote
3
answers
199
views
3
answers
converting ensembl transcript ID to ensemble gene: problem & missing values
... Hello,   I have a long list of splice variants (ENSTxxx.y) from a DESeq2 experiment that I want to convert to the "clone_based_ensembl_transcript" and "clone_based_ensembl_gene" list. I used biomaRt v2.34.2 to test 3 transcripts in the list to make sure it works before converting the entire list: ...
biomart error ensembldb written 5 months ago by Yuqia0

Latest awards to Yuqia

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 247 users visited in the last hour