User: boting.m.ning

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Posts by boting.m.ning

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Comment: C: Questions on Pigengene
... $sft$fitIndices    Power     SFT.R.sq        slope truncated.R.sq   mean.k. median.k.   max.k. 1      1 6.849859e-01  4.364179088      0.6872780 198.34019 212.50254 216.3609 2      2 4.726176e-01  1.842884552      0.5106602 170.65618 192.17180 199.0158 3      3 3.342839e-01  1.071322555      0.43061 ...
written 6 months ago by boting.m.ning0
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Comment: C: Questions on Pigengene
... Hi Prof. Zare, I converted all my read counts into log(RPKM+1), but the same issue still persisted... Do you know if there is any other parts I should modify? Thanks a ton!   ...
written 6 months ago by boting.m.ning0
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Comment: C: Questions on Pigengene
...  I used the DESeq normalization. I would now assume this would not be the perfect normalization methods, correct? (Especially I compared the sample datasets you put in the package). I will try normalization suing log(RPKM+1) and see if that would work. In the meantime, is there any recommended "num ...
written 6 months ago by boting.m.ning0
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Questions on Pigengene
... I am working on a project trying to extract features from RNAseq data from monkeys that were challenged with Ebola Virus, and to build a classifier that could predict the disease stages of Ebola infection. During the process of literature research, I came across your the Bioconductor package Pigenge ...
wgcna pigengene written 6 months ago by boting.m.ning0 • updated 6 months ago by Habil Zare110

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