Admin: Martin Morgan

gravatar for Martin Morgan
Martin Morgan ♦♦ 21k
Reputation:
20,660
Status:
Trusted
Location:
United States
Website:
http://bioconductor.org/
Last seen:
9 hours ago
Joined:
12 years, 2 months ago
Email:
m************@roswellpark.org

Posts by Martin Morgan

<prev • 2,716 results • page 2 of 272 • next >
0
votes
1
answers
145
views
1
answers
Comment: C: Installing RnBeads via bioconductor - .onLoad failed in loadNamespace(), call: N
... Using R-2.4.3 should not be the problem. You could try to download and install the package without test-loading it $ wget https://bioconductor.org/packages/3.6/data/annotation/src/contrib/TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2.tar.gz $ R --vanilla CMD INSTALL --no-test-load TxDb.Hsapiens.UCSC.hg1 ...
written 21 days ago by Martin Morgan ♦♦ 21k
0
votes
1
answers
130
views
1
answers
Answer: A: ERROR: compilation failed for package RSQLite
... This is a problem with RSQLite, so should be reported at https://github.com/r-dbi/RSQLite/issues and / or to maintainer("RSQLite") or perhaps more likely with your own installation. This output In file included from /usr/local/include/assert.h:5:0, from /usr/include/c++/5/cassert ...
written 25 days ago by Martin Morgan ♦♦ 21k
0
votes
1
answers
130
views
1
answers
Comment: C: ERROR: compilation failed for package RSQLite
... Please update your question to contain the full output of the command biocLite("RSQLite"). ...
written 25 days ago by Martin Morgan ♦♦ 21k
0
votes
1
answers
145
views
1
answers
Comment: C: Installing RnBeads via bioconductor - .onLoad failed in loadNamespace(), call: N
... Sorry to be pedantic but can you show output like below $ R --vanilla -e "BiocInstaller::biocLite('TxDb.Hsapiens.UCSC.hg19.knownGene')" > BiocInstaller::biocLite('TxDb.Hsapiens.UCSC.hg19.knownGene') BioC_mirror: https://bioconductor.org Using Bioconductor 3.6 (BiocInstaller 1.28.0), R 3.4.2 Pat ...
written 25 days ago by Martin Morgan ♦♦ 21k
0
votes
1
answers
145
views
1
answers
Answer: A: Installing RnBeads via bioconductor - .onLoad failed in loadNamespace(), call: N
... Try re-installing the TxDb package, in a new 'vanilla' R session, e.g., from the command line `R --vanilla` ...
written 27 days ago by Martin Morgan ♦♦ 21k
0
votes
1
answers
102
views
1
answers
Answer: A: ranges input for GenomicFiles
... If you're asking about package development, then the bioc-devel mailing list is the correct place. Generally, method dispatch should work to the  'nearest' class, so if the class you are interested in contains (in S4 language) a class that is in the signature of the method you want to use, then thin ...
written 27 days ago by Martin Morgan ♦♦ 21k
0
votes
1
answers
152
views
1
answers
Answer: A: problem installing S.cerevisiae genome
... Try mapping the network drive \servidordc\docmentos$\... to a drive letter w:\ or similar, ad arranging for R to use the mapped drive. ...
written 4 weeks ago by Martin Morgan ♦♦ 21k
0
votes
4
answers
182
views
4
answers
Comment: C: SeqArray_1.19.2, SeqArray::info() for example gds data does not return correct c
... qliu7 and I looked at this a bit. Here's a reproducible example. gdsfile <- SeqArray::seqExampleFileName("gds") gdsfile <- SeqArray::seqOpen(gdsfile) xx <- .Call(SeqArray:::SEQ_GetData, gdsfile, "annotation/info/AA", FALSE) names(xx) ## NULL library(SeqArray) yy <- .Call(SeqArray::: ...
written 4 weeks ago by Martin Morgan ♦♦ 21k
0
votes
1
answers
150
views
1
answers
Comment: C: cummeRbund installation fails
... This issue https://github.com/Bioconductor/GenomicFeatures/issues/4 might be relevant in your case; it points to a problem in RMySQL with a workaround at https://github.com/r-dbi/RMySQL/issues/214#issuecomment-352667457 that might be ok until a fixed version is available. ...
written 4 weeks ago by Martin Morgan ♦♦ 21k
0
votes
1
answers
150
views
1
answers
Answer: A: cummeRbund installation fails
... The error message indicates that the MySQL client library is not found. The solution is to install the client library. If your operating system is, for instance, Ubuntu 16.04, the command would be indicated in the error message. So sudo apt-get install libmariadb-client-lgpl-dev Note that one typ ...
written 4 weeks ago by Martin Morgan ♦♦ 21k

Latest awards to Martin Morgan

Scholar 7 months ago, created an answer that has been accepted. For A: BiocParallel: messages shown only when processes finished
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Error in GRanges: could not find symbol "recursive" in environment of the generi
Scholar 7 months ago, created an answer that has been accepted. For A: BiocParallel: messages shown only when processes finished
Scholar 7 months ago, created an answer that has been accepted. For A: BiocParallel: messages shown only when processes finished
Scholar 7 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Scholar 7 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Scholar 8 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Good Answer 8 months ago, created an answer that was upvoted at least 5 times. For A: Error in GRanges: could not find symbol "recursive" in environment of the generi
Appreciated 8 months ago, created a post with more than 5 votes. For Statistics and Computing in Genome Science (CSAMA) Course Material
Scholar 8 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Scholar 8 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Scholar 9 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Appreciated 9 months ago, created a post with more than 5 votes. For BioC 2015 Annual Conference
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: about the use of subsetByFilter()
Scholar 9 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Scholar 9 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Scholar 9 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Good Answer 10 months ago, created an answer that was upvoted at least 5 times. For A: Combining RangedData objects is broken (IRanges 2.8.1 with R version 3.3.3 RC)
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: about the use of subsetByFilter()
Appreciated 10 months ago, created a post with more than 5 votes. For BioC 2015 Annual Conference
Scholar 10 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Scholar 10 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: about the use of subsetByFilter()
Scholar 10 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()
Scholar 11 months ago, created an answer that has been accepted. For A: about the use of subsetByFilter()

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 168 users visited in the last hour