Admin: Martin Morgan

gravatar for Martin Morgan
Martin Morgan ♦♦ 22k
Reputation:
21,620
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United States
Website:
http://bioconductor.org/
Last seen:
41 minutes ago
Joined:
12 years, 8 months ago
Email:
m************@roswellpark.org

Posts by Martin Morgan

<prev • 2,890 results • page 2 of 289 • next >
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Comment: C: tximport latest version on bioconductor and bioconda
... New features are added to Bioconductor's 'devel' branch. This branch becomes the 'release' once every six months. The most recent release, on May 1, was release 3.7 bioconda is currently using the previous release, version 3.6, so the most recent 'new feature' available in bioconda was introduced in ...
written 1 day ago by Martin Morgan ♦♦ 22k
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Comment: C: single cell RNA-seq pipeline
... In general, look at https://bioconductor.org/packages and then the 'Workflows' biocViews terms. ...
written 2 days ago by Martin Morgan ♦♦ 22k
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Comment: C: ChIPQC error: "non-zero exit status"
... Error: package or namespace load failed for �DiffBind� in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): there is no package called �stringi� Error: package ‘DiffBind’ could not be loaded Although DiffBind could not be loaded, the reason is because 'there is no package called " ...
written 3 days ago by Martin Morgan ♦♦ 22k
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Comment: C: Time format change when import in R from Excel
... Hello harne.anup! We believe that this post does not fit the main topic of this site. Not relevant for this forum For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If you disagree please tell us why in a reply ...
written 3 days ago by Martin Morgan ♦♦ 22k
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Comment: C: maptpx installation from GitHub
... Hello gowthamee! We believe that this post does not fit the main topic of this site. Not relevant for this forum For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If you disagree please tell us why in a reply b ...
written 3 days ago by Martin Morgan ♦♦ 22k
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Answer: A: ChIPQC error: "non-zero exit status"
... Tackle the first error that is reported there is no package called 'RCurl' and debug that first -- what happens with BiocInstaller::biocLite("RCurl") ? ...
written 3 days ago by Martin Morgan ♦♦ 22k
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Comment: C: Installing ShortRead - error: zlib not found even with zlib in LD_LIBRARY_PATH
... Thanks for working on this. It sounds like a bioconda issue (I guess -- is that what creates the 'miniconda2' directory?), and that somehow R should know to look in the paths you indicate for the include and lib files. Can you pursue this 'upstream' with the bioconda team? ...
written 5 days ago by Martin Morgan ♦♦ 22k
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Comment: C: 'downstream' disappeared from GenomicRanges package?
... Have you told us what version you think there was a GenomicRanges::downstream() function? Not much point saying that precede / follow are comparable without knowing what to compare with... ...
written 6 days ago by Martin Morgan ♦♦ 22k
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Comment: C: 'downstream' disappeared from GenomicRanges package?
... There is a VariantAnnotation::downstream() function. ...
written 7 days ago by Martin Morgan ♦♦ 22k
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Comment: C: Issues with lohSpec
... From your presentation of the error message, it seems the function is expecting a column 'n_vaf' but your data has a column 'b_vaf' ...
written 7 days ago by Martin Morgan ♦♦ 22k

Latest awards to Martin Morgan

Scholar 9 weeks ago, created an answer that has been accepted. For A: Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 3
Scholar 9 weeks ago, created an answer that has been accepted. For A: How to get chip information from annotation databases
Commentator 9 weeks ago, created a comment with at least 3 up-votes. For C: Eliminating repetitive calls to ExperimentHub
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 3
Scholar 12 months ago, created an answer that has been accepted. For A: Setting ExperimentHub Cache Location
Scholar 12 months ago, created an answer that has been accepted. For A: Extracting sequences from BSgenomeViews object
Scholar 12 months ago, created an answer that has been accepted. For A: annotation: how to use "character" for function 'select()'
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Rsamtools use for R version 3.4.1
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: error with many packages: "Error : .onLoad failed in loadNamespace() for 'org.Hs
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Import gff from character?
Scholar 12 months ago, created an answer that has been accepted. For A: Warnings messages can not we handles/hidden
Scholar 12 months ago, created an answer that has been accepted. For A: Error building R Markdown v2 document
Scholar 12 months ago, created an answer that has been accepted. For A: How to initialize a SummarizedExperiment?
Scholar 12 months ago, created an answer that has been accepted. For A: about filtering variants in a VCF file
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: How to convert a GRangesList object into a GRanges object?
Scholar 12 months ago, created an answer that has been accepted. For A: Cannot install CummeRbund on R version 3.0.2 (2013-09-25)
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: about filtering variants in a VCF file
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Does Rhtslib currently work on Windows?
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Setting ExperimentHub Cache Location
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Filtering a BAM file using RSamtools
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Error in GRanges: could not find symbol "recursive" in environment of the generi
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: about the use of subsetByFilter()
Scholar 12 months ago, created an answer that has been accepted. For A: Error with MSA package - could not find symbol "recursive"
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: How to access Emsembl plants with biomaRt
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 3

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