User: edoardobertolini

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Posts by edoardobertolini

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Importing transcript abundance datasets generated with Salmon 0.14.0
... Hi! I have recently updated Salmon to the latest version (0.14.0) and I'm not anymore able to import Salmon outputs into R using the code > tximport(file, type = "salmon", txOut = TRUE, countsFromAbundance = > "no") This is the error that I get when I run the code above: > txi <- txim ...
tximport written 4 months ago by edoardobertolini0 • updated 4 months ago by Michael Love25k
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correlation between PCGs and the neighboring lncRNAs using LINC
... Hello! I'm trying to correlate the expression of PCGs and the adjacent lncRNAs within the same tissue using TPM values. My input is a matrix 496 TPM of one column where the first 256 rows are lncRNAs and the remaining are PCGs. Gene names are specified as rownames. What is the best approach? I tri ...
coexpression linc linc package written 19 months ago by edoardobertolini0

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