User: peibo_xu

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Comment: C: Zero pvalues after lfcShrink of DESeq2 package
... Hi Michael, Thanks for helping. First, I should re-edit the issue, I before `lfcShrink`, I can see volcano plot is more flat(some pvalues are large), but after `lfcShrink`, many gene points are on the middle part of plot(very small pvaluse but about zero fold changes). After checking with https://s ...
written 4 months ago by peibo_xu0
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Zero pvalues after lfcShrink of DESeq2 package
... Hi, I am using results by `results()` function from DESeq2 package to do volcano plot. I found after I did `lfcShrink` function, I got many zero pvalues, but not before `lfcShrink`, even though I set `independentFiltering=FALSE,cooksCutoff=FALSE`. How should I solve this? Any suggestion which on ...
deseq2 pvalue lfcshrink written 4 months ago by peibo_xu0 • updated 4 months ago by Michael Love25k

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