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0
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2
replies
3.5k
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Dealing with multi-overlapping and multi-mapping reads
RNA-seq featureCounts ht-seq
written 3.8 years ago by ▴ 80
0
votes
1
reply
1.1k
views
Gene level methylation values
methylation methylKit bsseq
updated 2.5 years ago by ▴ 10 • written 2.8 years ago by ▴ 80
0
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1
reply
3.1k
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Comment: Comment: Map uniprot entry name to accession number
3.1 years ago ag1805x ▴ 80
3
votes
2
replies
5.0k
views
Calculation of module membership in WGCNA
WGCNA RNA-seq ModuleMembership Network Hub gene
updated 23 months ago by ▴ 10 • written 3.7 years ago by ▴ 80
0
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0
replies
2.1k
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Comment: C: Soft-threshold in WGCNA
3.7 years ago ag1805x ▴ 80
0
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2
replies
2.1k
views
Soft-threshold in WGCNA
wgcna network bicor threshold
updated 3.7 years ago by ★ 3.0k • written 3.7 years ago by ▴ 80
1
vote
0
replies
14k
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Comment: C: WGCNA Hub Gene Selection Method
4.1 years ago ag1805x ▴ 80
0
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0
replies
8.3k
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Comment: C: WGCNA export to cytoscape
4.3 years ago ag1805x ▴ 80
0
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1
reply
15k
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Comment: C: WGCNA: Understanding module-trait correlations
4.3 years ago ag1805x ▴ 80
0
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0
replies
1.8k
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Comment: C: Case-control study using WGCNA
4.4 years ago ag1805x ▴ 80
0
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1
reply
1.8k
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Comment: C: Case-control study using WGCNA
4.4 years ago ag1805x ▴ 80
2
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4
replies
1.8k
views
Case-control study using WGCNA
wgcna network rna-seq
4.4 years ago ag1805x ▴ 80
0
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0
replies
2.2k
views
Comment: C: Removal of batch effects from RNA-seq data for WGCNA
4.4 years ago ag1805x ▴ 80
0
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1
reply
2.2k
views
Comment: C: Removal of batch effects from RNA-seq data for WGCNA
4.4 years ago ag1805x ▴ 80
1
vote
4
replies
2.2k
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Removal of batch effects from RNA-seq data for WGCNA
limma deseq2 wgcna RUVseq
4.4 years ago ag1805x ▴ 80
0
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0
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6.0k
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Comment: C: WGCNA: 1) low soft thresholding power, 2) large modules, 3) best correlation for
4.4 years ago ag1805x ▴ 80
0
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0
replies
1.4k
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Comment: C: Difference in PCA variance calculation in DESeq2
4.5 years ago ag1805x ▴ 80
0
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1
reply
1.4k
views
Comment: C: Difference in PCA variance calculation in DESeq2
4.5 years ago ag1805x ▴ 80
1
vote
4
replies
1.4k
views
Difference in PCA variance calculation in DESeq2
deseq2 pca hclust
updated 4.5 years ago by 41k • written 4.5 years ago by ▴ 80
2
votes
1
reply
4.8k
views
Comment: C: tximport transcript missing
4.6 years ago ag1805x ▴ 80
2
votes
3
replies
1.0k
views
Design for introducing batch effect in DESeq2
deseq2 combat batch effect rna-seq edger
updated 4.7 years ago by ★ 1.3k • written 4.7 years ago by ▴ 80
0
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0
replies
671
views
How to arrange multiple plots into one page in NOISeq?
noiseq RNA-seq quality control
4.7 years ago ag1805x ▴ 80
0
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1
reply
902
views
Comment: C: WGCNA from different lengths RNAseq read
5.0 years ago ag1805x ▴ 80
4
votes
3
replies
902
views
WGCNA from different lengths RNAseq read
wgcna network co-expression rnaseq
updated 5.0 years ago by ★ 3.0k • written 5.0 years ago by ▴ 80
0
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0
replies
12k
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Comment: C: DESeq2 FPKM normalization
5.6 years ago ag1805x ▴ 80
0
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1
reply
19k
views
Comment: C: log2FoldChange calculation in DESeq2 output
5.8 years ago ag1805x ▴ 80
0
votes
1
reply
6.1k
views
Comment: C: "Over-correction" in the size-factors of the DESeq2 package
5.8 years ago ag1805x ▴ 80
0
votes
2
replies
2.2k
views
What are the different strategies to filter out low count genes?
rnaseq deseq2 differential gene expression
updated 5.8 years ago by ★ 13k • written 5.8 years ago by ▴ 80
0
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0
replies
6.3k
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Comment: C: Too many (?) differentially expressed genes - edgeR and DESeq
5.8 years ago ag1805x ▴ 80
0
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2
replies
7.4k
views
Comment: C: DESeq2 vs Ballgown results
5.8 years ago ag1805x ▴ 80
0
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0
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6.5k
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Comment: C: Ballgown up and down regulated genes
6.1 years ago ag1805x ▴ 80
1
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1
reply
1.3k
views
What is the exact formula for the calculation of Fold Change (FC), p-val and q-val in Ballgown stattest?
ballgown stattest fold change
updated 6.1 years ago by 65k • written 6.1 years ago by ▴ 80
1
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0
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3.5k
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Comment: C: How fold change is calculated in Ballgown?
6.1 years ago ag1805x ▴ 80
0
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0
replies
3.5k
views
Comment: C: How fold change is calculated in Ballgown?
6.1 years ago ag1805x ▴ 80
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