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Posts by jambroise83
How to find back the list of genes involved in pathways produced by a kegg analysis (kegga) with limma package
... Hello, I used edger to detect differentially expressed genes based on my RNA-seq data from Rattus Norvegicus samples. I obtained a list of DE genes and I used the 'kegga' function from the limma package in order to detect kegg pathways with abnormal number of DE genes. In the result, I obtain a l ...
... When I run the following code to obtain the corresponding symbol and the entrezid of the ENSRNOG00000048449 gene, I obtain no result: library(Rattus.norvegicus) ENSEMBL <- keys(Rattus.norvegicus,keytype = 'ENSEMBL') annotation <- select(Rattus.norvegicus,keytype='ENSEMBL',keys=ENSEMBL,colum ...
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