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0
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2
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1.0k
views
Annotation package for Agilent Human G4110A chip
Agilent annotation
updated 7.5 years ago by 46k • written 14.4 years ago by ★ 1.1k
1
vote
2
replies
10k
views
Mapping gene symbols to gene names (org.Hs.eg.db?)
convert convert
updated 8.3 years ago by 60k • written 8.3 years ago by ★ 1.1k
2
votes
8
replies
1.4k
views
Genes annotated to GO:0031281 using org.Hs.eg.db
GO Homo sapiens GO Homo sapiens
updated 8.4 years ago by 60k • written 8.4 years ago by ★ 1.1k
0
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0
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781
views
Significance of overlapping GO terms?
GO GO
8.5 years ago Tim Smith ★ 1.1k
0
votes
0
replies
1.0k
views
OMIM - biomaRt?
biomaRt biomaRt
8.5 years ago Tim Smith ★ 1.1k
1
vote
1
reply
6.3k
views
biomaRt: retrieve exon sequence, start and end positions
updated 8.6 years ago by ▴ 540 • written 8.6 years ago by ★ 1.1k
0
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5
replies
1.4k
views
Graph of methylation data around TSS - Repitools or other package?
GO Repitools GO Repitools
updated 8.7 years ago by ★ 1.5k • written 8.7 years ago by ★ 1.1k
0
votes
1
reply
797
views
Error: IdeogramTrack (Gviz)
Gviz Gviz
updated 9.1 years ago by 13k • written 9.1 years ago by ★ 1.1k
1
vote
1
reply
3.0k
views
biomaRt: refseq gene details
updated 9.2 years ago by ▴ 540 • written 9.2 years ago by ★ 1.1k
0
votes
0
replies
503
views
Expected value of finding a sequence
Biostrings IRanges Biostrings IRanges
9.4 years ago Tim Smith ★ 1.1k
2
votes
1
reply
3.0k
views
biomaRt query: retrieve exon locations etc
biomaRt biomaRt
updated 9.5 years ago by ▴ 540 • written 9.6 years ago by ★ 1.1k
0
votes
3
replies
1.3k
views
BLAST - annotate package?
Organism Organism
updated 10.0 years ago by 60k • written 10.0 years ago by ★ 1.1k
0
votes
0
replies
1.0k
views
Gviz : UcscTrack ..
GO hgu133a GO hgu133a
10.1 years ago Tim Smith ★ 1.1k
0
votes
1
reply
874
views
Package Gviz: boxplot question
Gviz Gviz
10.1 years ago Tim Smith ★ 1.1k
0
votes
5
replies
2.1k
views
GSEA with methylation data
updated 10.2 years ago by 21k • written 10.2 years ago by ★ 1.1k
0
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0
replies
1.7k
views
SVA package: remove batch effects using ComBat
sva sva
10.3 years ago Tim Smith ★ 1.1k
0
votes
0
replies
673
views
Biostrings: PWM with background probabilities
GO GO
10.7 years ago Tim Smith ★ 1.1k
0
votes
0
replies
950
views
seqLogo package: sequence logo graph with background frequency?
seqLogo seqLogo
10.7 years ago Tim Smith ★ 1.1k
0
votes
1
reply
829
views
biomaRt query ??
biomaRt biomaRt
updated 10.8 years ago by ▴ 660 • written 10.8 years ago by ★ 1.1k
0
votes
2
replies
1.5k
views
Sliding window t-test?
Cancer Cancer
updated 11.2 years ago by ▴ 190 • written 11.2 years ago by ★ 1.1k
0
votes
1
reply
891
views
rtracklayer error?
rtracklayer rtracklayer
updated 11.2 years ago by 11k • written 11.2 years ago by ★ 1.1k
0
votes
1
reply
696
views
rtracklayer - browserSession error
hgu133plus2 rtracklayer hgu133plus2 rtracklayer
updated 11.2 years ago by 11k • written 11.2 years ago by ★ 1.1k
0
votes
8
replies
1.0k
views
microRNA hg build?
microRNA microRNA
updated 11.3 years ago by ★ 7.2k • written 11.3 years ago by ★ 1.1k
0
votes
3
replies
2.7k
views
UCSC: convert from hg18 to hg19 - rtracklayer?
rtracklayer rtracklayer
updated 11.3 years ago by 11k • written 11.3 years ago by ★ 1.1k
0
votes
2
replies
722
views
int.geneint.db package installation
GO GO
updated 11.9 years ago by ★ 2.0k • written 11.9 years ago by ★ 1.1k
0
votes
2
replies
3.0k
views
installing 'lme4' package fails
updated 12.1 years ago by 6.5k • written 12.1 years ago by ★ 1.1k
0
votes
6
replies
1.5k
views
converting position from '-' strand to '+' strand
convert convert
updated 5 weeks ago by ▴ 10 • written 12.4 years ago by ★ 1.1k
0
votes
10
replies
1.3k
views
microRNA: which genes code for a specific mirna?
miRNA GO microRNA miRNA GO microRNA
updated 12.4 years ago by ▴ 830 • written 12.4 years ago by ★ 1.1k
0
votes
1
reply
831
views
hgu133a : probe ids to gene symbols
probe probe
updated 12.5 years ago by 21k • written 12.5 years ago by ★ 1.1k
0
votes
0
replies
743
views
Packages to query/process TCGA data?
Cancer Cancer
12.5 years ago Tim Smith ★ 1.1k
0
votes
1
reply
1.1k
views
CNV analysis with cghMCR/CNTools
GO CGH hgu133a hgu95av2 GO CGH hgu133a hgu95av2
updated 12.6 years ago by ★ 2.9k • written 12.6 years ago by ★ 1.1k
0
votes
1
reply
1.4k
views
getBM function in biomaRt
SNP GO hgu133a SNP GO hgu133a
updated 12.7 years ago by ▴ 600 • written 12.7 years ago by ★ 1.1k
0
votes
2
replies
1.6k
views
Package/Function to calculate CpG density
updated 12.8 years ago by ▴ 460 • written 12.8 years ago by ★ 1.1k
1
vote
6
replies
3.0k
views
SNP to Gene mapping (GWAS)
updated 12.8 years ago by 6.6k • written 12.8 years ago by ★ 1.1k
0
votes
2
replies
945
views
biomaRt query
GO hgu133a GO hgu133a
updated 12.8 years ago by ▴ 600 • written 12.8 years ago by ★ 1.1k
0
votes
6
replies
1.1k
views
Trans sites associated with a gene (Transfac database?)
updated 12.9 years ago by ▴ 620 • written 12.9 years ago by ★ 1.1k
0
votes
0
replies
442
views
GWAS and gene expression datasets for same cases?
Cancer Cancer
13.0 years ago Tim Smith ★ 1.1k
0
votes
2
replies
529
views
GO.db query error?
GO GO
updated 13.1 years ago by ★ 7.2k • written 13.1 years ago by ★ 1.1k
1
vote
2
replies
3.4k
views
biomaRt: getting start and end locations of gene on chromosome
GO biomaRt GO biomaRt
updated 13.1 years ago by 60k • written 13.1 years ago by ★ 1.1k
0
votes
4
replies
582
views
Gene location (Base pair number)
13.1 years ago Tim Smith ★ 1.1k
0
votes
3
replies
1.4k
views
KEGGgraph: gene ids for nodes in a pathway
KEGGgraph KEGGgraph
updated 13.3 years ago by ▴ 340 • written 13.3 years ago by ★ 1.1k
0
votes
7
replies
998
views
KEGG: gene ids for nodes in a pathway
13.3 years ago Tim Smith ★ 1.1k
0
votes
3
replies
1.7k
views
Visualizing KEGG pathways
Pathways graph Pathways graph
updated 13.3 years ago by ▴ 400 • written 13.3 years ago by ★ 1.1k
0
votes
2
replies
595
views
Visualize KEGG pathway
updated 13.3 years ago by ★ 3.4k • written 13.3 years ago by ★ 1.1k
0
votes
0
replies
415
views
RankAggreg package : Partial lists?
Microarray Microarray
13.5 years ago Tim Smith ★ 1.1k
0
votes
3
replies
5.8k
views
org.Hs.eg.db -- Entrez ID to Gene Symbol conversion
Cancer Homo sapiens convert Cancer Homo sapiens convert
updated 13.5 years ago by ▴ 10 • written 13.5 years ago by ★ 1.1k
0
votes
4
replies
960
views
xtable links
updated 13.7 years ago by 60k • written 13.7 years ago by ★ 1.1k
0
votes
1
reply
1.1k
views
Clone ID to Gene symbol mapping for Hs?
Microarray Microarray
updated 13.8 years ago by 21k • written 13.8 years ago by ★ 1.1k
0
votes
1
reply
891
views
mget function - newbie question
GO GO
updated 13.8 years ago by ★ 2.0k • written 13.8 years ago by ★ 1.1k
0
votes
5
replies
1.9k
views
GOstats: Listing genes from hyperGTest
Annotation GO probe affy Annotation GO probe affy
13.8 years ago Tim Smith ★ 1.1k
67 results • Page 1 of 2
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