User: luxeredias

gravatar for luxeredias
luxeredias10
Reputation:
10
Status:
New User
Location:
Brazil - Belo Horizonte - UFMG
Last seen:
6 months, 4 weeks ago
Joined:
8 months, 3 weeks ago
Email:
l*********@gmail.com

PhD student at Laboratório de Genética Bioquímica at Universidade Federal de Minas Gerais (Brazil)

Posts by luxeredias

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Answer: A: difference among tximport scaledTPM, lengthScaledTPM and the original TPM output
... Dear all, Following up with the topic, I also struggled a bit to figure out salmon+tximport outputs, but after reading forums+papers and looking into my own data I came up with this scheme of how I think RNAseq normalization of salmon+tximport data works. https://drive.google.com/file/d/1FQJ6Ao2L9 ...
written 7 months ago by luxeredias10
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Comment: C: WGCNA - module membership via max kME?
... From your description, it seems you are having a similar issue as I had when dealing with single-cell RNAseq in WGCNA. Does your gene dendrogram look something like this: https://drive.google.com/open?id=1SdhPk8YAYuHrV6m0TtKH-3sDC_61gODm If it does, and if that is what you mean by "Why is it that ...
written 8 months ago by luxeredias10

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