User: luluchen

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luluchen0
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Posts by luluchen

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Comment: C: how to achieve reproducibility with BiocParallel regardless of number of threads
... Thanks for your comments! Now I know how to set a specific seed for each parallel job in R code or C++ code.  ...
written 3 months ago by luluchen0
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Comment: C: how to achieve reproducibility with BiocParallel regardless of number of threads
... Thanks for your answers. As you are also a contributer of limma package, can I ask you for the suggestion on my package. In my permutation test, each computational job will permute samples and then call lmFit and eBayes of limma. Do you think re-writting a Rcpp function which calls lmFit and eBayes ...
written 3 months ago by luluchen0
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how to achieve reproducibility with BiocParallel regardless of number of threads and OS (set.seed is disallowed)
... Dear All, My package will use BiocParallel for permutation test.  To make permutations reproducible, I read some discussions online (https://stat.ethz.ch/pipermail/bioc-devel/2015-June/007583.html, https://stackoverflow.com/questions/30610375/how-to-run-permutations-using-mclapply-in-a-reproducible ...
biocparallel written 3 months ago by luluchen0 • updated 3 months ago by Aaron Lun23k

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