User: blehtine

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blehtine0
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Posts by blehtine

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Answer: A: Deseq2 with replicate mean and variance information
... Thank you very much! I started off by looking for an off-the-shelf solution but unfortunately couldn't find a good one that would work for the type of data I have at hand. That's how I ended up trying with DESeq2 in the first place. I'm very open for other solutions, and will definitely post it here ...
written 19 months ago by blehtine0
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Deseq2 with replicate mean and variance information
... I'm trying to find differentially abundant proteins in different environmental (carbon sources, growth rates, stressors) conditions in E. coli. Altogether, I have absolute proteomics data for 2359 proteins (in 22 conditions). For each protein I have the protein count, and the coefficient of variance ...
proteomics deseq deseq2 differential analysis written 19 months ago by blehtine0

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