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Comment: Comment: PureCN C (integer segment copy number) in curated samples
2.4 years ago twtoal ▴ 10
0
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1
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1.3k
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Comment: Comment: PureCN C (integer segment copy number) in curated samples
2.4 years ago twtoal ▴ 10
1
vote
5
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1.3k
views
PureCN C (integer segment copy number) in curated samples
PureC PureCN
updated 2.4 years ago by ▴ 130 • written 2.4 years ago by ▴ 10
0
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2
replies
979
views
PureCN COSMIC VCF via PureCN.R - is there an option?
PureCN COSMIC
updated 2.6 years ago by ▴ 130 • written 2.6 years ago by ▴ 10
0
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1
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689
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PureCN performance of somatic/germline status prediction without matched normal?
SomaticMutation GermlineMutation PureCN
updated 2.7 years ago by ▴ 130 • written 2.7 years ago by ▴ 10
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0
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859
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Comment: Comment: Corrupt data in Sex column of .csv file
3.0 years ago twtoal ▴ 10
0
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3
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859
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Corrupt data in Sex column of .csv file
PureCN
3.0 years ago twtoal ▴ 10
0
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0
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859
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Comment: Comment: Corrupt data in Sex column of .csv file
3.0 years ago twtoal ▴ 10
0
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0
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1.1k
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Comment: C: PureCN/ASCAT comparison and purity/ploidy of multi-regional sequencing data
3.8 years ago twtoal ▴ 10
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2
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1.1k
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PureCN/ASCAT comparison and purity/ploidy of multi-regional sequencing data
PureCN ASCAT purity ploidy multi-regional sequencing
3.8 years ago twtoal ▴ 10
0
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1
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999
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Comment: C: PureCN gene LOH very common, amp/del not
3.9 years ago twtoal ▴ 10
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3
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999
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PureCN gene LOH very common, amp/del not
PureCN gene amplification deletion loh
updated 3.9 years ago by ▴ 130 • written 3.9 years ago by ▴ 10
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0
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962
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Comment: C: Why is PureCN LOH file missing some segments
4.1 years ago twtoal ▴ 10
0
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1
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962
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Comment: C: Why is PureCN LOH file missing some segments
4.1 years ago twtoal ▴ 10
0
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4
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962
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Why is PureCN LOH file missing some segments
purecn loh
4.1 years ago twtoal ▴ 10
0
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0
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232
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PureCN Raw Coverage Available?
PureCN coverage raw_coverage
4.2 years ago twtoal ▴ 10
0
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2
replies
1.1k
views
PureCN version clashes at GitHub and Bioconductor
version PureCN
updated 4.4 years ago by ★ 6.5k • written 4.4 years ago by ▴ 10
0
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0
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899
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Comment: C: callLOH output file NA values
4.9 years ago twtoal ▴ 10
0
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1
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899
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Comment: C: callLOH output file NA values
4.9 years ago twtoal ▴ 10
0
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3
replies
899
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callLOH output file NA values
PureCN NA values
updated 5.0 years ago by ▴ 130 • written 5.0 years ago by ▴ 10
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1
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1.0k
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PureCN.R warning "duplicate keys in header will be forced to unique rownames"
PureCN
updated 5.0 years ago by ▴ 130 • written 5.0 years ago by ▴ 10
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1
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870
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Chromosome arm loss and --maxhomozygousloss default
Purecn maxhomozygousloss
5.4 years ago twtoal ▴ 10
0
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1
reply
867
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Copy ratio close to but not exactly 1
PureCN CopyRatio
updated 5.5 years ago by ▴ 130 • written 5.5 years ago by ▴ 10
0
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1
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1.1k
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Comment: C: Assigning DUP/DEL p-value to CNV segment
5.5 years ago twtoal ▴ 10
0
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3
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1.1k
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Assigning DUP/DEL p-value to CNV segment
PureCN
5.5 years ago twtoal ▴ 10
0
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1
reply
998
views
Copy ratio threshold for calling actual CNV
PureCN copy-ratio threshold
updated 5.5 years ago by ▴ 130 • written 5.5 years ago by ▴ 10
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0
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893
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Answer: A: Mutation Burden file and manual curation
5.6 years ago twtoal ▴ 10
0
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2
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893
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Mutation Burden file and manual curation
purecn mutation_burden manual_curation
5.6 years ago twtoal ▴ 10
0
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1
reply
999
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PureCN Solution Heatmap values
PureCN heatmap likelihoods
5.6 years ago twtoal ▴ 10
0
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0
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1.1k
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Comment: C: CNV in Normal Samples?
5.6 years ago twtoal ▴ 10
0
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2
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1.1k
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CNV in Normal Samples?
PureCN Germline Normal CNV
updated 5.6 years ago by ▴ 130 • written 5.6 years ago by ▴ 10
1
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1
reply
860
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PureCN recover optimum solution
PureCN Optimum_solution
updated 5.7 years ago by ▴ 130 • written 5.7 years ago by ▴ 10
0
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1
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739
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PureCN PureCN.R --rds option recreate all output files?
PureCN --rds
updated 5.7 years ago by ▴ 130 • written 5.7 years ago by ▴ 10
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1
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1.0k
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Comment: C: PureCN Manual Curation .rds file
5.7 years ago twtoal ▴ 10
1
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3
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1.0k
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PureCN Manual Curation .rds file
PureCN rds_file manual_curation
updated 5.7 years ago by ▴ 130 • written 5.7 years ago by ▴ 10
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0
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1.7k
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Comment: C: Is mean adjusted for purity?
5.7 years ago twtoal ▴ 10
0
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0
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1.3k
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Comment: C: PureCN optimum solution vs heat map
5.7 years ago twtoal ▴ 10
0
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1
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1.7k
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Comment: C: Is mean adjusted for purity?
5.9 years ago • updated 5.7 years ago twtoal ▴ 10
0
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2
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1.3k
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Comment: C: PureCN optimum solution vs heat map
5.7 years ago twtoal ▴ 10
0
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4
replies
1.3k
views
PureCN optimum solution vs heat map
PureCN Solution Heatmap
updated 5.7 years ago by ▴ 130 • written 5.7 years ago by ▴ 10
0
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1
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1.7k
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Comment: C: Is mean adjusted for purity?
5.9 years ago • updated 5.7 years ago twtoal ▴ 10
0
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0
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1.8k
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Answer: A: PureCN: Error in plot.window(...) : need finite 'ylim' values
5.7 years ago twtoal ▴ 10
0
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3
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1.8k
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PureCN: Error in plot.window(...) : need finite 'ylim' values
PureCN
5.8 years ago • updated 5.7 years ago twtoal ▴ 10
0
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1
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1.8k
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Comment: C: PureCN: Error in plot.window(...) : need finite 'ylim' values
5.8 years ago twtoal ▴ 10
0
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1
reply
1.1k
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PureCN Error in xg[1, ] : incorrect number of dimensions
PureCN
5.8 years ago twtoal ▴ 10
0
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1
reply
1.6k
views
Comment: C: Unable to find solution: low coverage
5.9 years ago twtoal ▴ 10
0
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5
replies
1.7k
views
Is mean adjusted for purity?
PureCN mean ratio
updated 5.9 years ago by ▴ 130 • written 5.9 years ago by ▴ 10
0
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2
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1.6k
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Comment: C: Unable to find solution: low coverage
5.9 years ago twtoal ▴ 10
3
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5
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1.6k
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Understanding PureCN and its germline SNPs
PureCN germline SNP
updated 5.9 years ago by • 0 • written 6.1 years ago by ▴ 10
0
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2
replies
1.6k
views
Comment: C: Unable to find solution: low coverage
5.9 years ago twtoal ▴ 10
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