User: hhhcce

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hhhcce0
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Posts by hhhcce

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Answer: A: DiffBind error with dba.count
... Dear Rory, I added bParallel=FALSE to the code and it seems to work. The bam files can now be loaded. I checked the bam files using samtools flagstat and your codes and the bam files seem to be fine. However, I stumbled upon another problem when I started running dba.count. The process was killed ...
written 8 months ago by hhhcce0
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Answer: A: DiffBind error with dba.count
... [70] biomaRt_2.34.2 glue_1.2.0 XML_3.98-1.10 [73] ShortRead_1.36.1 latticeExtra_0.6-28 data.table_1.10.4-3 [76] gtable_0.2.0 amap_0.8-14 assertthat_0.2.0 [79] ggplot2_2.2.1 xtable_1.8-2 surv ...
written 8 months ago by hhhcce0
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Answer: A: DiffBind error with dba.count
... loaded via a namespace (and not attached):  [1] Category_2.44.0          bitops_1.0-6             bit64_0.9-7               [4] RColorBrewer_1.1-2       progress_1.1.2           httr_1.3.1                [7] Rgraphviz_2.22.0         tools_3.4.4              backports_1.1.2          [10] R6_2.2.2    ...
written 8 months ago by hhhcce0
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Answer: A: DiffBind error with dba.count
... > sessionInfo() R version 3.4.4 (2018-03-15) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 16.04.4 LTS Matrix products: default BLAS: /usr/lib/openblas-base/libblas.so.3 LAPACK: /usr/lib/libopenblasp-r0.2.18.so locale:  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C                [ ...
written 8 months ago by hhhcce0
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DiffBind error with dba.count
... I tried running the dba.count function and got the following error message? The bam files seem to be fine. > chip_seq=chip_seq(tamoxifen,summit=250) Error: Error processing one or more read files. Check warnings(). In addition: There were 28 warnings (use warnings() to see them) > warnings( ...
diffbind written 8 months ago by hhhcce0 • updated 7 months ago by Rory Stark2.6k

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