User: burak kutlu

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burak kutlu200
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Posts by burak kutlu

<prev • 20 results • page 1 of 2 • next >
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updating edge visualization rules of an existing graph in RedeR
... Hello I am trying to highlight some edges on a graph that is already plotted on the active RedeR session. Is there a way to do that without losing the original layout. Thanks -burak [[alternative HTML version deleted]] ...
graph reder written 4.0 years ago by burak kutlu200 • updated 4.0 years ago by m castro10
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Comment: C: BiomaRt useMart() issues
... Hello Steffen I did suspect that it was the case, as it worked only a couple of days ago... Unfortunately, I still get the same error as of Aug 26 2.57 pm UTC-08:00 Thank you -burak ________________________________ From: Steffen Durinck Cc: "bioconductor@stat.math.ethz.ch" Sent: Monday, Augu ...
written 5.0 years ago by burak kutlu200
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BiomaRt useMart() issues
... Hello There seems to be an issue with the useMart() which spits out the following error that has been observed before with an old version of Biomart and was fixed by updating. https://lists.biomart.org/pipermail/users/2012-June/002673.html Many thanks in advance -burak ensembl <- useMart("ensem ...
go written 5.0 years ago by burak kutlu200 • updated 5.0 years ago by Steffen Durinck530
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Answer: A: GenomicFeatures.Hsapiens.UCSC.hg19
... Hi Are there plans to release the hg19 version of GenomicFeatures.Hsapiens.UCSC soon? Thanks -burak ...
written 8.3 years ago by burak kutlu200
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matchPdict error
... Hi I am trying to use matchPDict() and below's the error I get. This happens with my objects as well, but I am showing the vignette example. thanks in advance -burak # I've made sure that ce2dict0 was corectly created > ce2dict0cw15 <- DNAStringSet(ce2dict0, end=15) > runAnalysis2(ce2dict0 ...
bsgenome written 9.5 years ago by burak kutlu200
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how can I apply a function to each element of a GeneSetCollection (GSEABase)
... Hello I am trying to apply a function to each element of a GeneSetCollection object. I have a problem preserving the data class, if I use lapply(). Is using a for loop my only option? Thanks for any help -burak Here's what I do: > gsc GeneSetCollection names: chr16q, chr5q23, ..., INOSITOL_OR ...
written 9.6 years ago by burak kutlu200 • updated 9.6 years ago by Francois Pepin1.3k
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altrenative gene symbols
... Hi Is there a way to convert non-HUGO gene symbol identifiers to entrez gene or other ids? Example: ACSL1 aka ACS1; LACS; FACL1; FACL2; LACS1; LACS2; ACSL1 Thanks in advance -burak [[alternative HTML version deleted]] ...
convert written 9.7 years ago by burak kutlu200 • updated 9.7 years ago by Marc Carlson7.2k
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MBNI custom CDF packages
... Hi In the current BioC release (2.2), the custom CDF packages are no longer hosted. I was wondering whether this will be the case in the following releases or can we expect to see these packages again? Thanks -burak [[alternative HTML version deleted]] ...
cdf written 10.2 years ago by burak kutlu200 • updated 10.2 years ago by Manhong Dai200
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Answer: A: RBGL function highlyConnSG not recognized
... An embedded and charset-unspecified text was scrubbed... Name: not available Url: https://stat.ethz.ch/pipermail/bioconductor/attachments/20071226/ a911dd2c/attachment.pl ...
written 10.7 years ago by burak kutlu200
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Answer: A: RBGL function highlyConnSG not recognized
... An embedded and charset-unspecified text was scrubbed... Name: not available Url: https://stat.ethz.ch/pipermail/bioconductor/attachments/20071221/ bb8767fb/attachment.pl ...
written 10.7 years ago by burak kutlu200

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