User: Shamaine

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Shamaine 0
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Posts by Shamaine

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Comment: C: dba.report() output counts
... Got it, thanks so much for the clarification! Cheers ...
written 14 months ago by Shamaine 0
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dba.report() output counts
... Hello, I would like to clarify what are the units of the "Conc" columns and also the read counts column if we set bCounts=T. For my analysis, I performed dba.count() with score=DBA_SCORE_RPKM and dba.analyze() with method=DBA_DESEQ2. When I call dba.report(DBA, contrast = 1, th=0.05, fold = 1.5, ...
diffbind written 14 months ago by Shamaine 0 • updated 14 months ago by Rory Stark3.0k
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Differential ChIP regions across >2 conditions
... Hi Rory, Thanks and sorry about commenting instead of starting a new question. I have copy-pasted the question below for reference , and would like to follow up on your response. I may have to rephrase my question: Beyond visualization, I wanted to know if it is possible for DiffBind to identify di ...
chipseq diffbind written 20 months ago by Shamaine 0
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Comment: C: DiffBind Analysis with more than 2 samples?
... Dear Rory, I am a beginner to bioinformatics and DiffBind. Firstly, thank you for this very useful tool and the handy guides! I have some additional questions regarding using DiffBind on more than 2 conditions. Currently I have 4 different conditions (representing different "subtypes" of a disease ...
written 20 months ago by Shamaine 0

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