User: krwyaong.ju

gravatar for krwyaong.ju
Reputation:
0
Status:
New User
Location:
Last seen:
2 months ago
Joined:
2 months, 3 weeks ago
Email:
k**********@gmail.com

Posts by krwyaong.ju

<prev • 6 results • page 1 of 1 • next >
0
votes
1
answer
76
views
1
answer
summarizeOverlaps 'sequences have incompatible seqlengths' errors
... I follow the tutorial; RNA-Seq differential expression work flow using DESeq2 (http://www.sthda.com/english/wiki/rna-seq-differential-expression-work-flow-using-deseq2). I've got stuck below; Could you figure it out? > library( "GenomicAlignments" ) > se <- summarizeOverlaps( exonsByGene ...
deseq2 written 9 weeks ago by krwyaong.ju0 • updated 9 weeks ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
123
views
1
answer
there is no "tx2gene.gencode.v27.csv" in tximportData
... as installed tximportData, there was no "tx2gene.gencode.v27.csv". below is the shell for installation; > source("https://bioconductor.org/biocLite.R") Bioconductor version 3.6 (BiocInstaller 1.28.0), ?biocLite for help A new version of Bioconductor is available after installing the most recent ...
tximport written 9 weeks ago by krwyaong.ju0 • updated 9 weeks ago by Michael Love18k
1
vote
1
answer
87
views
1
answer
installation of "GenomicFeatures"
... installation of "GenomicFeatures" failed; pls say how to figure it out? > source("https://bioconductor.org/biocLite.R") Bioconductor version 3.6 (BiocInstaller 1.28.0), ?biocLite for help > biocLite("GenomicFeatures") BioC_mirror: https://bioconductor.org Using Bioconductor 3.6 (BiocInstalle ...
genomicfeatures written 11 weeks ago by krwyaong.ju0 • updated 11 weeks ago by James W. MacDonald46k
0
votes
1
answers
191
views
1
answers
Comment: A: use deseq2 in asthma
... I 've done. seems no need of "here", I gave the correct path without writing "here" in your scripts. another question; how to install "GenomeFeatures". many tries but failed. how to do? ...
written 12 weeks ago by krwyaong.ju0
0
votes
1
answers
191
views
1
answers
Comment: A: use deseq2 in asthma
... > list.files("../data/quants/") character(0) > list.files("/home/jkr/asthma/data/quants/")  [1] "SRR1565926" "SRR1565927" "SRR1565928" "SRR1565929" "SRR1565930"  [6] "SRR1565931" "SRR1565932" "SRR1565933" "SRR1565934" "SRR1565935" [11] "SRR1565936" "SRR1565937" "SRR1565938" "SRR1565939" "SRR15 ...
written 12 weeks ago by krwyaong.ju0
0
votes
1
answer
191
views
1
answer
Tutorial: use deseq2 in asthma
... Dear Michael Love, I am interested in your github; https://github.com/mikelove/asthma/blob/master/scripts/asthma.Rmd I installed all packages as your guidelines (https://angus.readthedocs.io/en/2017/deseq2-asthma.html) now I am running your scripts on Ubuntu16.04. list.files("../data/quants/") . ...
deseq2 tutorial written 12 weeks ago by krwyaong.ju0

Latest awards to krwyaong.ju

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 286 users visited in the last hour