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ChIPQC gives Bam file has 297 contigs Error: subscript contains out-of-bounds indices
... I like to use ChIPqc packages, so I used output of Bowtie2 (after deduplicating using Picards) as `Bam` file and used `narrowPeak` file as output of MACS2, but I faced with below Error. sample = ChIPQCsample("align-path/undup_uniqu_SRR5339509_ENCSR890NXD_control_2.bam", peaks="peak path/GSM253 ...
chipqc qc chip-seq written 5 weeks ago by star0

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