User: Mathieu Gendarme

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3 months, 1 week ago
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m***************@gmail.com

Posts by Mathieu Gendarme

<prev • 7 results • page 1 of 1 • next >
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Comment: C: EBImage -- local machine VS cluster -- could not find function "slot"
... Fantastic Andrzej! It runs without any problem with your bug fix. Thanks you very much!   ...
written 3 months ago by Mathieu Gendarme10
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Comment: C: EBImage -- local machine VS cluster -- could not find function "slot"
... The script is called from a .sh script that can be found here: https://www.dropbox.com/s/x1477r7xvrgm0r3/IfTestCluster_Bioconductor.sh?dl=0 ...
written 4 months ago by Mathieu Gendarme10
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EBImage -- local machine VS cluster -- could not find function "slot"
... Dear all, I am currently trying to run a script for image segmentation using EBImage. The script I used was tested on two different platform, either a local workstation running Ubuntu or on a cluster running CentOS version 7. Everything runs fine on the workstation but on the cluster I keep getti ...
ebimage written 4 months ago by Mathieu Gendarme10 • updated 3 months ago by Andrzej Oleś720
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Answer: A: Relabelling objects - EBImage
... Dear Andrzej, Thank you very much, you solved the problem! The idea of using the largest fraction of the speck in a Voronoi in the case of multiple overlap looks great to me, thanks for that too. Coming back to your thresholding method for detecting only the bright and small objects; it is true th ...
written 5 months ago by Mathieu Gendarme10
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Comment: C: Relabelling objects - EBImage
... Hi all, I have made the data public here: https://www.dropbox.com/s/1m2rq9d2kjwam28/Example_Segmentation_BioconductorForum.R?dl=0 https://www.dropbox.com/s/t0lkxnc1jvoqx0w/Img405.tiff?dl=0 https://www.dropbox.com/s/eb1kbnjcc2zt4lk/Img488.tiff?dl=0 https://www.dropbox.com/s/t6o3dycq4eebw2x/Segmenta ...
written 5 months ago by Mathieu Gendarme10
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Comment: C: Relabelling objects - EBImage
... Hi Andrzej, thanks for replying quickly. The files are now publicly available. Cheers, Mathieu ...
written 5 months ago by Mathieu Gendarme10
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Relabelling objects - EBImage
... Dear all, I am trying to relabel objects identified in images from immunofluroescence microscopy. In a first step I am segmenting my nuclei to get individual cells than I am generating a voronoi as a proxy for the cytoplasm of the cells. Aside of this I am detecting specks from another channel. H ...
ebimage image analysis image processing written 5 months ago by Mathieu Gendarme10

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