User: grabear

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grabear0
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Posts by grabear

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Comment: C: edgeR: How can I determine which factors significantly explain my DE genes?
... Well they have a plan.  I believe they will be using NumPy's an SciPy's math library, which is written in C.  So it should be comparable, but I'm not sure to be honest.  I think some people just prefer Python over R.  I personally like both, and use both. ...
written 12 months ago by grabear0
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Comment: C: edgeR: How can I determine which factors significantly explain my DE genes?
... Ok.  Thanks!  I'm a biomedical engineer by design, but I've been retraining myself to do computation biology over the past few years. What you said makes sense, and some of which crossed my mind.  However, I don't like to put my data into a conceptual black box.  Now I feel much more confident in m ...
written 12 months ago by grabear0
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edgeR: How can I determine which factors significantly explain my DE genes?
... Hello SE.  I'm relatively new to using edgeR and GLM's.  I have been doing some basic research on linear regression.  In many examples of using the stats::glm function, there have been ways to determine which coefficients help explain the data being modeled after.   For example Taken from Youtube.. ...
edger differential gene expression design matrix model.matrix written 12 months ago by grabear0 • updated 12 months ago by Gordon Smyth37k

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