User: shreygandhi1990

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Posts by shreygandhi1990

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Comment: C: Differences in contrast results while using DESeq2 for one vs all rest combined
... Thanks for the reply. But I still do not understand what the above formulas do. Also, why is it important to remove the intercept in this case? ...
written 3 months ago by shreygandhi199010
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Differences in contrast results while using DESeq2 for one vs all rest combined conditions
... I have 4 tissue types which I am trying to contrast between different groups using DeSeq2 in order to find genes unique to each tissue type(Let's say tissueA vs all others). I went through some posts: https://support.bioconductor.org/p/86347/ and https://www.biostars.org/p/317843/ and tried the nume ...
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Comment: C: Obtaining transcript names in RSEM
... Hi, I tried using the suggested method by stating the column names.. txi.rsem_isoform <- tximport(files = files_isoform,tx2gene = tx2gene,type = "rsem", txOut = TRUE, geneIdCol = "gene_id", txIdCol = "transcript_id", countsCol = "expected_count", lengthCol = "effective_length", abundanceCol = "T ...
written 11 months ago by shreygandhi199010

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