User: hwteng1971

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hwteng19710
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Posts by hwteng1971

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Comment: C: how to add a new column in colData in SummarizedExperiment
... thanks for comment might I ask a small question? how to retract the rowData, colData, assay and re-SummarizedExperiment(); I think this method might be the best method and easy to to after I reconstruct a new colData() thanks lots ...
written 5 months ago by hwteng19710
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Comment: A: how to add a new column in colData in SummarizedExperiment
... by Levi's concept if I do a merge separated,   then get  the new data as char  then cbind ( old and new data) then we can subset again  But is any method can merge old colData and new colData I thinks it is important because all like MS-SQL, this action is important  or is any setter can use  ...
written 5 months ago by hwteng19710
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Comment: C: how to add a new column in colData in SummarizedExperiment
... to dear Levi Waldron  Thank you for helping. this can work. but  sometimes, We want to merge 2 set by some same ID   for example, use want to cbind 2 col by same ID or patient barcode what should we can do ??? sincerely need you expert ...
written 5 months ago by hwteng19710
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how to add a new column in colData in SummarizedExperiment
... Hi all: I meet a problem : I use TCGAbiolink to analyszed TCGA query <- GDCquery(project = c("TCGA-COAD","TCGA-READ"),                    data.category = "Gene expression",                   data.type = "Gene expression quantification",                   experimental.strategy = "RNA-Seq", ...
summarizedexperiment tcgabiolinks written 5 months ago by hwteng19710
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Answer: A: GDCquery(project = "TCGA-COAD") did not work; but GDCquery(project = "TCGA-REA
... now, Tiago Chedraoui Silva kindly provied the answer to our question. thanks lots Hello, GDC api moved to another path. Some versions of libcurl seems not to be able to redirect. We updated the link to api. It should be fixed now. Could you please update the package from GitHub with: devtool ...
written 5 months ago by hwteng19710
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Comment: C: GDCquery(project = "TCGA-COAD") did not work; but GDCquery(project = "TCGA-REA
... 2018/6/4 NOW IT WORK AGAIN  ...
written 5 months ago by hwteng19710
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(Closed) GDCquery(project = "TCGA-COAD") did not work; but GDCquery(project = "TCGA-READ") work why??
... to dear alls: I am a semi-new in TCGAbiolinks i find a bug: GDCquery(project = "TCGA-COAD") did not work;   but GDCquery(project = "TCGA-READ") work why?? is any comment and how to fixed it thanks   ...
gdcquery written 5 months ago by hwteng19710
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Comment: C: GDCquery fail in some project , for example: TCGA-COAD mRNA
... the following is error messge please We will retry to access GDC! Error in is.response(x) : 'getURL()' failed:   URL: https://gdc-api.nci.nih.gov/files/?pretty=true&expand=cases.samples.portions.analytes.aliquots,cases.project,center,analysis&size=2493&filters=%7B%22op%22:%22and%22,%22c ...
written 5 months ago by hwteng19710
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(Closed) GDCquery fail in some project , for example: TCGA-COAD mRNA
... Hi all: I use the GDCquery to get GDC data  and a new bug noted.  GDCquery  fail in some project , for example: TCGA-COAD mRNA is fail but TCGA-READ is work and for TCGA-COAD methylation is work?   please. the A-team of TCGAbiolins could answer this q?? Thanks lots ( the following did not go ) ...
tcgabiolinks gdcquery written 5 months ago by hwteng19710
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Comment: C: GDCquery(project = "TCGA-COAD") did not work; but GDCquery(project = "TCGA-REA
... hI ALL IT IS REALLY A PROBLEM, IT SEEM BE THE PROBLEM OF gdc QUERY OF tcga DATA BASE,  IS ANYONE WITH COMMENT? PLEASE  ...
written 5 months ago by hwteng19710

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