User: c.martinezruiz

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Posts by c.martinezruiz

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DESeq2 for comparisons within group
... Hello! I am running a gene expression analysis in a dataset where I have 3 castes and 14 tissues. The aim is to get pairwise comparisons between castes within tissues, but running a DESeq analysis including all data, to benefit from the gene information across tissues. The formula looks like this: ...
deseq2 interaction factors complex design written 5 months ago by c.martinezruiz0 • updated 5 months ago by Michael Love26k
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ASE using DESeq2
... Hello! I am using DESeq2 to analyse allele specifc expression in two different assays. I one of the assays I have six samples with no particular treatment, in the other assay I have 'colony' and 'body part' as blocking factors. Both assays have been analysed separately. My approach up until now ha ...
rnaseq normalization deseq deseq2 allele specific expression written 17 months ago by c.martinezruiz0 • updated 17 months ago by Simon Anders3.6k

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