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Posts by channsoden
Comment: C: Rhdf5 C-library out of date
... The incompatibility is between two more-or-less interdependent tools for quantifying gene expression from RNA sequencing data. Kallisto uses system libraries (1.10 on my institution's cluster) to write the output of read pseudo-alignment while Sleuth uses rhdf5 to read the raw counts and build an ex ...
... I am trying to use a package that relies upon rhdf5 for reading hdf5 files. Unfortunately my install of rhdf5 2.25.3 links to the HDF5 1.8.19 C library and my hdf5 files were created using HDF5 1.10.1. Is there a way to update R's HDF5 library to 1.10.* so that the newer version of the files can be ...
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