User: antoinefelden

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Posts by antoinefelden

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Comment: C: How to apply KEGG enrichment analysis to the overlap of multiple contrasts in MA
... Thanks a lot, that works! ...
written 22 days ago by antoinefelden10
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Comment: C: How to apply KEGG enrichment analysis to the overlap of multiple contrasts in MA
... Hi Gordon, Sorry I reported the wrong MArrayLM fit. Before using it as input for kegga(), I did change the gene_id into RefSeq identifiers as below: $genes     gene_id line test 1 105678280    1   no 2 105678292    2   no 3 105678279    3   no 4 105678278    4   no 5 105678296    5   no 10387 more ...
written 22 days ago by antoinefelden10
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How to apply KEGG enrichment analysis to the overlap of multiple contrasts in MArrayLM fit?
... I ran a DGE analysis with 4 different contrasts with lmFit() + contrasts.fit() in limma, and I'm interested in the overlap of the four different contrasts. I identified the genes that are indeed differentially expressed in all four contrasts, and coded that in tfit$genes$test ("yes" if differentiall ...
limma kegg written 25 days ago by antoinefelden10 • updated 25 days ago by Gordon Smyth35k
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Answer: A: Segfault error when loading WGCNA
... Thanks everyone, I did not manage to solve the error with the versions I had already installed, but install and loading went fine using up-to-date R and packages versions. Cheers! ...
written 5 weeks ago by antoinefelden10
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Segfault error when loading WGCNA
... Hi, I keep running in the following error when trying to load WGCNA with library("WGCNA"), and I couldn't extract any good lead from the logs. I already tried to reinstall the package, but got the same error. Any lead? Cheers. *** caught segfault *** address (nil), cause 'memory not mapped' Tra ...
wgcna wgcna package written 6 weeks ago by antoinefelden10

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