User: jennyl.smith12

Reputation:
0
Status:
New User
Location:
Last seen:
18 hours ago
Joined:
1 month ago
Email:
j*************@gmail.com

Posts by jennyl.smith12

<prev • 3 results • page 1 of 1 • next >
2
votes
2
answers
55
views
2
answers
Subread FeatureCounts for Exon level quantification: Length estimate for Exons as low as 1 base-pair
... Hello,  I am working on quantifying RNASeq data at the exon level, which is intended for use in the DEXSeq package. I followed the documentation provided in the DEXSeq tutorial (http://bioconductor.org/packages/release/bioc/vignettes/DEXSeq/inst/doc/DEXSeq.pdf, page 23), as well as the commands on ...
rnaseq dexseq featurecounts subread written 3 days ago by jennyl.smith120 • updated 1 day ago by Gordon Smyth34k
0
votes
1
answers
61
views
1
answers
Comment: C: Error in DESeq2 Unmix() function: L-BFGS-B needs finite values of 'fn'
... Hi Michael,    Thank you for your response. I examined the correlation of the variance stabilized transformed counts and we do have very correlated pure samples.  The minimum correlation found was still 0.95.  I tried to run the algorithm again using those two pure samples (cor = 0.95), and  I was ...
written 27 days ago by jennyl.smith120
0
votes
1
answer
61
views
1
answer
Error in DESeq2 Unmix() function: L-BFGS-B needs finite values of 'fn'
... Hello,  I wanted to use the unmix() function from DESeq2 to investigate the mixing proportions of normal and tumor from bulk tumor RNAseq.  I was hoping to compare the results from using this function with A) normalized counts from the median ratio method and B) Transcripts per million (TPM). Firs ...
rnaseq deseq2 deconvolution written 4 weeks ago by jennyl.smith120 • updated 4 weeks ago by Michael Love18k

Latest awards to jennyl.smith12

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 284 users visited in the last hour