User: warrena
warrena • 0
- Reputation:
- 0
- Status:
- New User
- Last seen:
- 10 months, 3 weeks ago
- Joined:
- 12 months ago
- Email:
- w******@virginia.edu
Profile information, website and location are not shown for new users.
This helps us discourage the inappropriate use of our site.
Posts by warrena
<prev
• 4 results •
page 1 of 1 •
next >
0
votes
1
answer
249
views
1
answer
... I am trying to get mm10 gene annotations with gene names. I have tried the following:
ncbiRefSeq = makeTxDbFromUCSC(genome="mm10", tablename="ncbiRefSeq")
geneid = makeTxDbFromUCSC(genome="mm10", tablename="geneid")
knownGene = makeTxDbFromUCSC(genome="mm10", tablename="knownGene")
In the first ...
0
votes
1
answer
191
views
1
answers
Comment:
C: error with detectTranscripts
... Thanks, Anusha. This worked. I'll add that for users of R 3.4.4 I had to call keepStandardChromosomes() with pruning.mode="coarse". Here is the code:
require(groHMM)
library(IRanges)
library(GenomicRanges)
library(Rsamtools)
library(GenomicAlignments)
data <- readGAlignments("poolA_index1_samp ...
written 11 months ago by
warrena • 0
0
votes
1
answer
191
views
1
answer
... Greetings,
I am attempting to use detectTranscripts() from groHMM using bams from a PRO-seq experiment. I am getting the following error:
Error in Fp[[i]] + 1 : non-numeric argument to binary operator
In addition: Warning messages:
1: In mclapply(readsList, function(x) { :
all scheduled cores en ...
1
vote
1
answer
359
views
1
answer
... I have PRO-seq data with the following conditions: untreated (time 0), vehicle, and treatment (3 replicates each, 4 time points for each vehicle/treatment combination). I would like to evaluate treatment effects as a function of time. I have done the following:
1. Divided the reads in each conditio ...
written 12 months ago by
warrena • 0
• updated
12 months ago by
Michael Love ♦ 24k
Latest awards to warrena
No awards yet. Soon to come :-)
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 16.09
Traffic: 330 users visited in the last hour