User: celi0001

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celi00010
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Posts by celi0001

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Comment: C: countsFromAbundance for gene-level RSEM import in tximport
... Just realised that, anyway, I should have in fact been using the counts without gene length normalisation for the DEG analysis. ...
written 16 months ago by celi00010
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Comment: C: countsFromAbundance for gene-level RSEM import in tximport
... I see! Thanks for the quick reply! ...
written 16 months ago by celi00010
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countsFromAbundance for gene-level RSEM import in tximport
... Hi all, I’ve used tximport to import RSEM's “*.genes.results”  files and I’ve found that tximport uses the values from RSEM’s "expected counts" regardless of the value specified to the argument “countsFromAbundance” (i.e. “lengthScaledTPM”, “scaledTPM” or “no”). Would I have to correct the expected ...
tximport rsem written 16 months ago by celi00010 • updated 16 months ago by Michael Love25k

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