User: prakashpandey1111

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Posts by prakashpandey1111

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Comment: C: Protein pathway analysis -- Classify, organize, and cluster a list of proteins /
... Check clusterProfiler & DOSE package ...
written 14 months ago by prakashpandey11110
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topGO enrichment analysis
... I have a expression set of 91 uniprot ids across three time points. I performed fuzzy c-means clustering using Mfuzz & now i wish to perform enrichment analysis using topGO but i am confused with the input data required and the steps involved in to use topGO. I referred topGO manual but i'm conf ...
topgo written 15 months ago by prakashpandey11110
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PROBLEM WHILE IMPORTING FOR edgeR
... i have a data set of 91 uniprot id's across three time points.I wish to perform differential gene expression analysis using edgeR. I checked https://www.bioconductor.org/packages/devel/bioc/vignettes/edgeR/inst/doc/edgeRUsersGuide.pdf and various citation but i am facing issues while importing. And ...
edger differential gene expression written 15 months ago by prakashpandey11110
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PROBLEM WITH MFUZZ
... While using mfuzz for gene expression analysis i'm stuck at one thing regarding fold change- 1.) I calculated log2 (using R & manually)  and then standardisation manually using (x-mean)/sd taking input of x from log2. Standardisation result done by R is different with respect to one done manual ...
mfuzz log2 fold change standardisation written 15 months ago by prakashpandey11110
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For optimal c and m using fuzzy c-means clustering
... Hi  Anyone please help me out using any example expression set/dataset in finding out optimal c & m.? i'm stuck at a dataset of 91 protien ids across 3 time points. Also there is a doubt regarding fold range in expression change while using mfuzz.plot as some of the  normalised value is beyon ...
mfuzz written 16 months ago by prakashpandey11110

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