User: ap874

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ap8740
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Comment: C: DESeq2 for time series using time as continuous and looking at effect of time on
... What I want to pull out are genes that are DE when compared to themselves at any of the other points in time. So rather than doing pairwise comparisons for every day in every combination (i.e., 0 vs 1, 0 vs 2, ..., 0 vs 17, 1 vs 2, ..., 16 vs 17), my idea was to use the fact that DESeq2 does the LRT ...
written 16 months ago by ap8740 • updated 16 months ago by Michael Love26k
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DESeq2 for time series using time as continuous and looking at effect of time on DE
... Hello, My question is (I believe) more of a conceptual nature of what I can do with a time course RNA Seq dataset. I will still include the code below (and please let me know if I leave something out that should be in here and I’ll make sure to include it). My dataset consists of 4 genotypes that ...
timecourse deseq2 multiple time points michael love mlr written 17 months ago by ap8740 • updated 17 months ago by Michael Love26k

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