User: charlesgwellem

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Posts by charlesgwellem

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Comment: C: Error: package or namespace load failed for 'ChIPseeker': 'TxDb.Hsapiens.UCSC.hg
... Thank you Martin. After removing the digest package I still have the same error. ...
written 4 months ago by charlesgwellem10
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Error: package or namespace load failed for 'ChIPseeker': 'TxDb.Hsapiens.UCSC.hg19.knownGene' is not exported from 'namespace: TxDb.Hsapiens.UCSC.hg19.knownGene'
... Hi. I am not able to load the Chipseeker package. I have installed in the following way and I keep having errors while loading and I do not know why. BiocManager::install("ChIPseeker") BiocManager::install("TxDb.Hsapiens.UCSC.hg38.knownGene") BiocManager::install("TxDb.Hsapiens.UCSC.hg1 ...
chipseq chipseeker R bioconductor written 4 months ago by charlesgwellem10 • updated 4 months ago by Martin Morgan ♦♦ 24k
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Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
... From this link [remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline ][1], I have learned that depending on context, it is perfectly valid to remove X and Y chromosomal genes in RNA-seq data before doing differential expression analysis. However I only have access to the count matri ...
deseq2 written 7 months ago by charlesgwellem10 • updated 7 months ago by Luiz10
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Error : Expecting a single value: [extent=3]
... I will be grateful for any hint on how to correct the code. I am a beginner with the Rccp package and R programming. I have an R data frame df with special columns (columns with lists), to simulate my processed gene expression data: df<- data.frame(w= 1:3, x=3:5, y=6:8, z = I(list(1:2, 1:3, 1:4) ...
R bioconductor rcpp written 16 months ago by charlesgwellem10
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Answer: A: Error in log2(exprs(eSet)) : non-numeric argument to mathematical function
... Thank you very much Mr. Morgan. I have solved the problem by adding  exprs=Biobase::exprs to the top of the script. ...
written 16 months ago by charlesgwellem10
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Error in log2(exprs(eSet)) : non-numeric argument to mathematical function
... Hi fiolks, any hint on why I get the error : Error in log2(exprs(eSet)) :    non-numeric argument to mathematical function >abatch<-ReadAffy() >eSet<-mas5(abatch) >eSet ExpressionSet (storageMode: lockedEnvironment) assayData: 22283 features, 8 samples    element names: exprs, se ...
microarray biobase written 16 months ago by charlesgwellem10

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