User: hxlei613

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hxlei6130
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Posts by hxlei613

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Comment: C: Could GenomicFeature include genes that are on multiple chromosomes?
... First thank you very much. I think this solution is good however I also have a manual annotation which cannot be imported using makeTxDbFromUCSC(). The same gene on multiple chromosome also exists in it. How should I deal with this ? ...
written 9 months ago by hxlei6130
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Could GenomicFeature include genes that are on multiple chromosomes?
... Hi, I am working with macaque, whose annotation and reference are not complete. I download Refseq annotation from UCSC and load the gtf using this. annotation_m = makeTxDbFromGFF(gtfFile, format = 'gtf', dataSource = 'ensemble', ...
genomicfeature written 9 months ago by hxlei6130 • updated 9 months ago by James W. MacDonald50k
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How does GenomicFeature calculate 3'UTR?
... Hi,I use GenomicFeatures to extract 5'UTR and 3'UTR and find that GenomicFeatures doesn't seem to regard stop codon as 3'UTR. I want to make sure about this and wonder how to change the raw R code to include stop codon. The following is my procedure. I download gencode V19 gtf file from gencode htt ...
annotation genomicfeatures utr written 14 months ago by hxlei6130 • updated 13 months ago by Hervé Pagès ♦♦ 14k

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