User: sgld

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sgld0
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Posts by sgld

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Comment: C: edgeR: design matrix for methylation analysis
... Gordon,what is the role of library size in the differential methylation analysis.  I found there are many "keep.lib.sizes=Fasle " to causes the library sizes to be recomputed in the F1000Research paper. ...
written 15 months ago by sgld0
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Comment: C: edgeR: design matrix for methylation analysis
... thank you for your kindly reply and the nice paper. ...
written 15 months ago by sgld0
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Comment: C: edgeR: design matrix
... the method of edgeR or limma to identify differential  analysis is that regressing each group with linear model,then contrast the different groups' regression to identify difference ?  ...
written 15 months ago by sgld0
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Comment: C: edgeR: design matrix
... intercept group is 40-45cm? if i want to compare the 50-55cm group to 60-65cm group,how to do?I get a answer ,https://support.bioconductor.org/p/80910/ .is it ok for edgeR? ...
written 15 months ago by sgld0
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edgeR: design matrix for methylation analysis
... hi, when I using edgeR to identify differentially methylated regions (DMR) between different groups with edgeR guidepaper, I have a question about the design matrix . ###### > sam <- rep(samples, each=2) > meth <- factor(rep(c("Me","Un"),6), levels=c("Un","Me")) > design <- mod ...
edger methylation written 15 months ago by sgld0 • updated 13 months ago by Gordon Smyth38k

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