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Comment:
Comment: How to properly use DESeq2 for an experiment
22 months ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
7.9k
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Comment:
Comment: is it possible to use TPM in DESeq2 ?
22 months ago
Kevin Blighe
★ 3.9k
1
vote
1
reply
7.9k
views
Answer:
Answer: is it possible to use TPM in DESeq2 ?
22 months ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
1.3k
views
Comment:
Comment: How to run vst transformation
23 months ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
1.7k
views
Answer:
Answer: DESeq2- how to remove NA values
23 months ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
552
views
Answer:
Answer: Volcano plots
23 months ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
562
views
Comment:
Comment: Student
23 months ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
2.0k
views
Comment:
Comment: GDCprepare error in TARGET-AML data access
23 months ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
1.9k
views
Comment:
Comment: How can i download maf files form GDC Data Portal?
23 months ago
Kevin Blighe
★ 3.9k
1
vote
1
reply
1.3k
views
Answer:
Answer: Ensembl non responsive
23 months ago
Kevin Blighe
★ 3.9k
1
vote
0
replies
1.4k
views
Answer:
Answer: How to open up a zip file?
23 months ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
553
views
Comment:
Comment: apt-format-result, where is the --annotation-file?
24 months ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
1.7k
views
Comment:
Comment: Problem with fgsea
2.0 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
2.4k
views
Comment:
Comment: How to get the rsID of 4 million SNPA
2.1 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
1.2k
views
Comment:
Comment: How to do functional analysis on differentially expressed gene list from RNA-seq
2.2 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
1.5k
views
Comment:
Comment: Issue with selectively labelling genes in the Enhanced Volcano package
2.2 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
1.5k
views
Answer:
Answer: Issue with selectively labelling genes in the Enhanced Volcano package
2.2 years ago
Kevin Blighe
★ 3.9k
1
vote
0
replies
1.1k
views
Comment:
Comment: Bioconductor-RipSeeker
2.2 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
756
views
Comment:
Comment: Ensembl REST API Endpoints
2.2 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
878
views
Comment:
Comment: Unable to label in Enhanced Volcano
2.2 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
1.4k
views
Comment:
Comment: Enhancedvolcano labels superimposed on points
2.3 years ago
Kevin Blighe
★ 3.9k
1
vote
1
reply
1.4k
views
Answer:
Answer: Enhancedvolcano labels superimposed on points
2.3 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
3.7k
views
Comment:
Comment: Deseq2 normalization for WGCNA
2.3 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
1.2k
views
Answer:
Answer: 95% confidence intervals for PCA in DESEQ2
2.4 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
665
views
Comment:
Comment: Meta analysis
2.4 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
740
views
Comment:
Comment: R/Bioconductor package for Circulating Cell-Free DNA data analysis
2.4 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
1.5k
views
Comment:
Comment: ERROR installing EnhancedVolcano in R4.1
2.5 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
1.0k
views
Comment:
Comment: error in champ.norm
2.5 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
2.8k
views
Comment:
Comment: DESeq2 error in design~ code
2.5 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
1.8k
views
Comment:
Comment: EnhancedVolcano plot - labels
2.5 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
1.8k
views
Answer:
Answer: EnhancedVolcano plot - labels
2.5 years ago
Kevin Blighe
★ 3.9k
1
vote
0
replies
547
views
Comment:
Comment: Please merge Charles-23991 and 7857
2.6 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
1.1k
views
Comment:
Comment: LIMMA - for Microarrays?
2.6 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
1.2k
views
Comment:
Comment: pre-proccessing of TCGA data for WGCNA
2.6 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
1.3k
views
Comment:
Comment: Error message when importing my quant.sf files into R using tximport; should I s
2.6 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
4.5k
views
Comment:
Comment: ylim and xlim in Enhanced Volcano
2.6 years ago
Kevin Blighe
★ 3.9k
4
votes
1
reply
4.5k
views
Answer:
Answer: ylim and xlim in Enhanced Volcano
2.6 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
14k
views
Answer:
Answer: hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
2.6 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
3.1k
views
Comment:
Comment: How to count barcode sequences in a fastq file
2.6 years ago
Kevin Blighe
★ 3.9k
1
vote
1
reply
1.3k
views
Answer:
Answer: Confused about using ComBat_seq with voom and limma? Should run batch as a cova
2.6 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
593
views
Comment:
Comment: PCA M3C
2.6 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
1.1k
views
Comment:
Comment: Batch-corrected expression matrix NOT on a log2 scale
2.6 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
1.1k
views
Answer:
Answer: Batch-corrected expression matrix NOT on a log2 scale
2.6 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
667
views
Comment:
Comment: question about limma removeBatchEffect and feature selection using elasticnet.
2.6 years ago
Kevin Blighe
★ 3.9k
0
votes
0
replies
980
views
Comment:
Comment: Normalizing 5' Nascent RNA-seq data to identify differentially expressed transcr
2.6 years ago
Kevin Blighe
★ 3.9k
3
votes
0
replies
838
views
Answer:
Answer: Compare two samples by Deseqs
2.6 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
3.3k
views
Comment:
Comment: cant read celfiles using oligo package
2.6 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
3.3k
views
Comment:
Comment: cant read celfiles using oligo package
2.6 years ago
Kevin Blighe
★ 3.9k
1
vote
1
reply
2.2k
views
Comment:
Comment: Bootstrap value using ape package and including it in phylogenetic tree
2.6 years ago
Kevin Blighe
★ 3.9k
0
votes
1
reply
3.5k
views
Answer:
Answer: extracting the KEGG pathway for a set of genes
2.6 years ago
Kevin Blighe
★ 3.9k
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