User: devarajsaranya

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Posts by devarajsaranya

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how to run replicates at different time points
... Dear all I am having Affymetrix Dataset(.cel) with replicates for different time points.(1hr- 4cntrl,4expt, 4hrs-4cntrl,4expts, and 1day-4cntrl and 4 expt). Do i want to run limma separately for each time point or Can i run limma simultaneously for all time points by assigning them as a separate gr ...
limma written 5 weeks ago by devarajsaranya0 • updated 5 weeks ago by Aaron Lun21k
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Comment: C: running GEO series matrix file normalization and DEGs in limma
... Thank you for your reply James. do i want to do normalization for GSE matrix file.  ...
written 9 weeks ago by devarajsaranya0
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running GEO series matrix file normalization and DEGs in limma
... hello everyone Am trying to do DEG analysis in limma. Since am new to this i want to know how to normalize the data(GEO GSE matrix file). My data contains different time course samples (control and diseased) . I want to do DEGs at different time point within the data.Can anyone suggest me codes to ...
normalization limma tutorial written 10 weeks ago by devarajsaranya0 • updated 10 weeks ago by James W. MacDonald47k

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