User: Mehdi

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Mehdi0
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Posts by Mehdi

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Comment: C: Using goseq with unsupported organism
... Hello dear Dr.  Macdonald Thanks a lot for your help. i finished it. you are right, i need to work more carefully. but it was may first R project and first GWAS-GSA project. i began it about one month ago.  #####################  my homework: get one vector contain length of genes that are in ge ...
written 3 months ago by Mehdi0
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Comment: C: Error in Annotation Forge, makeOrgPackage
... Hi Dr MacDonald thanks for your response you are right, i have read goseq manual more times and other help files too. and ran it codes more times. as you say, goseq package has no gene length (geneLenDataBase)  an Go annotation for sheep.  ############################### for gene length: i dire ...
written 3 months ago by Mehdi0
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Comment: C: Error in Annotation Forge, makeOrgPackage
... when i ran goseq, found it not work. > library("org.Oaries.eg.db", lib.loc="C:/Program Files/R/R-3.5.0/library") Loading required package: AnnotationDbi Loading required package: Biobase Welcome to Bioconductor     Vignettes contain introductory material; view with 'browseVignettes()'.     To c ...
written 3 months ago by Mehdi0
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Comment: C: Error in Annotation Forge, makeOrgPackage
... thanks Dr for your response. yes, I've made the files. this is the codes: ## Makes an organism package for sheep data.frames: finchFile <- system.file("extdata","finch_info.txt", package="AnnotationForge") finch <- read.table(finchFile,sep="\t") ## prepare some data.frames fSym <- finc ...
written 3 months ago by Mehdi0
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Using goseq with unsupported organism
... Hi I am trying to build the organism package for sheep. At the first i used the codes that was in vignette help page. and so run makeOrgPackage.  makeOrgPackage(gene_info=fSym, chromosome=fChr, go=fGO,                version="1.0.0",                maintainer="Some One <so@someplace.org>",   ...
goseq written 3 months ago by Mehdi0 • updated 3 months ago by James W. MacDonald48k

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