User: Josh Wang

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Josh Wang10
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1 year, 2 months ago
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Posts by Josh Wang

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Comment: C: How to annotate DESeq2 object with gene size to get FPKMs
... EDIT: I reran the DESeq and the error message below disappeared. I don't know how. I am now able to get the fpkm values. Thank you for the help!!   Thanks for the reply! I ordered my gene length data frame like this: gene_lengths<-gene_lengths[match(rownames(mcols(dds, use.names=TRUE)), gene ...
written 15 months ago by Josh Wang10
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Comment: C: How to annotate DESeq2 object with gene size to get FPKMs
... Hi Michael, How do I arrange my list of basepairs in the same order as the dds? mcols(dds) does not have a column for gene IDs so I don't know where to start. Thank you! Josh EDIT: looks like it's just in alphabetical order? ...
written 15 months ago by Josh Wang10

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