User: arun.thirumaran

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Posts by arun.thirumaran

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Comment: C: DESeq2 Multi factor, multi time point comparison design formula
... Thank you very much for the reply Michael, I will follow these instructions.  Best regards Arun   ...
written 3 months ago by arun.thirumaran0
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Comment: C: DESeq2 Multi factor, multi time point comparison design formula
... Thank you Michael, Could you please suggest for one of my time point, ie, POC1.1 V PLDLA for day7 alone? When I am reordering the results based on padj values for this singkle time points I am getting 0 genes  > sum(res05$padj < 0.05, na.rm=TRUE) [1] 0 But if i do p value instead of padj ...
written 3 months ago by arun.thirumaran0
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Comment: C: DESeq2 Multi factor, multi time point comparison design formula
... Thank You Michael,  Unfortunately, I was not able to get any local help with R designs. Could you please comment on my analysis to compare between two polymers at three-time points? For example, I want to compare POC1.1 (treatment)  Vs PLDLA (control).  my sample table looks like,    ...
written 3 months ago by arun.thirumaran0
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Comment: C: DESeq2 Multi factor, multi time point comparison design formula
... Hi Simon, Thanks for the reply.  I have edited the question above. Here is the brief experimental details. The scaffold here is a hydroxyapatite dopped polymer. I am looking at osteoinductive properties of two different polymers (scaffold 1 and 2 (POC1.1 AND POC 1.3)) in comparison with an indust ...
written 4 months ago by arun.thirumaran0
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DESeq2 Multi factor, multi time point comparison design formula
... Hi, I am new to RNA seq and seq data analysis. I want to use DESeq2 to extract differential expression data for cells (from three donors) seeded on two different scaffolds (scaffold 1 and 2) across three different time points and compare them with an industry standard control (scaffold 3)  and pos ...
deseq deseq2 R rna-seq written 4 months ago by arun.thirumaran0 • updated 4 months ago by Michael Love20k

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