User: MAP

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MAP0
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Posts by MAP

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Comment: C: How to select a specific onthology after runing enrichGO for all 3 onthology
... Thanks for your reply emilliman4. I am actually doing what you suggested, but the option I was looking for could simplify a lot my workflow. It would be great if they can include this option in future updates.  ...
written 3 months ago by MAP0
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How to select a specific onthology after runing enrichGO for all 3 onthology
... Hi all, I have run a GO enrichment analysis using enrichGO() for all 3 onthologies at once: analysis <- enrichGO(gene = names_down_uniprot, OrgDb = "org.Mm.eg.db",   keyType = "UNIPROT", ont = "ALL", pvalueCutoff = 0.05,   pAdjustMethod = "fdr", universe = background_uniprot, qvalueCutoff = ...
clusterprofiler enrichgo written 4 months ago by MAP0
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Comment: C: How to export enrichGO results for future visualization with barplot, dotplot, e
... Nice!!! Simple and works!!! Thanks a bunch!!! ...
written 4 months ago by MAP0
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How to export enrichGO results for future visualization with barplot, dotplot, emapplot...
... Hi, I am using a super useful package called clusterProfiler (v3.8.1) for some GO enrichment analysis. I already read the vignettes and they were super useful to better understand how it works. For the GO enrichment this is what I am running: > GO_BP_test <- enrichGO(gene = names_all_down_ ...
clusterprofiler barplot enrichgo dotplot written 4 months ago by MAP0

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