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Posts by tapio.envall
... Hi! Unfortunately the data is not public and I can not share it. However, it may have something to do with how chromosomes are combined: I took two non-problematic chromosomes, and started to down-sample the other one, and ran ChIPQC for the combined file. Some "cracks" do appear, though not as dr ...
... Hi, I'm quality-checking the mouse ChIP-seq data with ChIPQC, but for some reason the coverage plot behaves weirdly. After this, I ran the samples by chromosomes and found out it is chr Y - which has much less reads than others - which is causing the trouble. To demonstrate, here are coverage plots ...
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