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User: ariel

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ariel0
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Posts by ariel

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Is there a way to specify where BiocInstaller will install packages similar to the "lib=...." for install.packages?
... install.pacakges has an option where you can specify where a package will be installed. For example: install.packages("ggplot2", lib="/data/Rpackages/") I use conda environments for package mangement. However, I occasionally run into a Bioconductor package which does not have a recipe. To not pollu ...
biocinstaller installation package installation custom library path written 5 months ago by ariel0 • updated 5 months ago by James W. MacDonald49k
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R says include dir is empty, but it's not.
... I don't know if this is an R issue, RStudio issue, or Bioconductor issue. When I try to install some packages, in this specific case DECIPHER, I get: > biocLite('DECIPHER', suppressUpdates=T) trying URL 'https://bioconductor.org/packages/3.6/bioc/src/contrib/DECIPHER_2.6.0.tar.gz' Content type ...
biocinstaller R bioconductor package installation written 6 months ago by ariel0 • updated 6 months ago by Martin Morgan ♦♦ 22k
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Install Bioconductor package locally/temporarily
... It is possible to install regular R packages so that they are deleted after the current session, and better yet, don't touch current packages. You can use install.packags(destdir="...") as well as other methods Is there a way to do this with bioconductor packages? I am working on a project that invo ...
R rstudio package installation written 6 months ago by ariel0 • updated 6 months ago by Martin Morgan ♦♦ 22k

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