User: Guangshuai Jia

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Posts by Guangshuai Jia

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Comment: C: Error of makeTechTrend() of Scran
... Thank you very much! It seems that it is because of the negative size factor as a similar question here: https://support.bioconductor.org/p/106422/ I have not fixed this problem yet, but it seems that I need to find a way to deal with such zeros in my data.  ...
written 3 months ago by Guangshuai Jia0
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Error of makeTechTrend() of Scran
... Hi,  I am using Scran and the tutorial as below to analyze singe-cell ATAC-seq data from 10x. https://www.bioconductor.org/packages/devel/workflows/vignettes/simpleSingleCell/inst/doc/work-3-tenx.html#7_modelling_the_mean-variance_trend When using the example data, I could run it without any issue ...
scran single-cell seq.default written 3 months ago by Guangshuai Jia0 • updated 3 months ago by Aaron Lun21k

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